miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 5' -61.7 NC_004684.1 + 6327 1.06 0.000459
Target:  5'- cAUCACCGUCGAAGGCCUGGCCGCCCAg -3'
miRNA:   3'- -UAGUGGCAGCUUCCGGACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 37630 0.83 0.024841
Target:  5'- -aCGCCGUCGGugcgcuGGCCaUGGCCGCCCGg -3'
miRNA:   3'- uaGUGGCAGCUu-----CCGG-ACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 11154 0.8 0.044817
Target:  5'- -gCGCCGUCGguGGaCCUGGCCGCCa- -3'
miRNA:   3'- uaGUGGCAGCuuCC-GGACCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 24723 0.78 0.057583
Target:  5'- -gCGCCGgaacgCGuagacguuGGCCUGGCCGCCCAu -3'
miRNA:   3'- uaGUGGCa----GCuu------CCGGACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 10821 0.77 0.069885
Target:  5'- -gCGCCGcUCGAucucgucGGCCUGGCUGCCCu -3'
miRNA:   3'- uaGUGGC-AGCUu------CCGGACCGGCGGGu -5'
18983 5' -61.7 NC_004684.1 + 56247 0.76 0.080182
Target:  5'- cGUCGCCGUCGucGGCCagGGCCacGCUCAu -3'
miRNA:   3'- -UAGUGGCAGCuuCCGGa-CCGG--CGGGU- -5'
18983 5' -61.7 NC_004684.1 + 63002 0.75 0.105276
Target:  5'- cGUCACCGgCcAGGGCCUGGCcCGCCg- -3'
miRNA:   3'- -UAGUGGCaGcUUCCGGACCG-GCGGgu -5'
18983 5' -61.7 NC_004684.1 + 37600 0.74 0.114145
Target:  5'- -gUACCGU-GcGGGCCcGGCCGCCCAu -3'
miRNA:   3'- uaGUGGCAgCuUCCGGaCCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 39326 0.74 0.123708
Target:  5'- aGUUGCCG-CGcccAGGCCgguUGGCCGCCCAc -3'
miRNA:   3'- -UAGUGGCaGCu--UCCGG---ACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 47273 0.74 0.127057
Target:  5'- uUCGCCGcgcagCGgcGGcCCUGGCCGCCg- -3'
miRNA:   3'- uAGUGGCa----GCuuCC-GGACCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 718 0.73 0.13401
Target:  5'- gGUCGCCGugcUCGucGGCCaGGUCGUCCAg -3'
miRNA:   3'- -UAGUGGC---AGCuuCCGGaCCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 65878 0.73 0.142814
Target:  5'- cGUCGCCGUUGAGcgcggcgcgcagguuGGCCaccagGGCCGCCgCAc -3'
miRNA:   3'- -UAGUGGCAGCUU---------------CCGGa----CCGGCGG-GU- -5'
18983 5' -61.7 NC_004684.1 + 50375 0.73 0.145096
Target:  5'- aGUCGCCGUCG--GGCCUGGCgcUGgCCAg -3'
miRNA:   3'- -UAGUGGCAGCuuCCGGACCG--GCgGGU- -5'
18983 5' -61.7 NC_004684.1 + 22372 0.73 0.148974
Target:  5'- -cCGCCG-CGcGGGCCuUGGCCGCCg- -3'
miRNA:   3'- uaGUGGCaGCuUCCGG-ACCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 45491 0.73 0.152947
Target:  5'- gGUCGCaCGUCGGGcauaccgcgauGGCCUGGCCcuGCUCAu -3'
miRNA:   3'- -UAGUG-GCAGCUU-----------CCGGACCGG--CGGGU- -5'
18983 5' -61.7 NC_004684.1 + 47168 0.72 0.174279
Target:  5'- -gCACCGUagCGgcGGCCagGGCCGCCg- -3'
miRNA:   3'- uaGUGGCA--GCuuCCGGa-CCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 58315 0.72 0.178853
Target:  5'- cUCACCGgCGAcgccGGGUCaUGGCgCGCCCGg -3'
miRNA:   3'- uAGUGGCaGCU----UCCGG-ACCG-GCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 20583 0.71 0.188319
Target:  5'- gGUCACCGUCGAAGGCa----CGCUCAc -3'
miRNA:   3'- -UAGUGGCAGCUUCCGgaccgGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 18725 0.71 0.193216
Target:  5'- cGUCACCGggCaGAGGUccaccgCUGGUCGCCCAg -3'
miRNA:   3'- -UAGUGGCa-GcUUCCG------GACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 58389 0.71 0.20858
Target:  5'- -gCACCGcgcgUGGAGGCCUuggcccGGCCGCCgGa -3'
miRNA:   3'- uaGUGGCa---GCUUCCGGA------CCGGCGGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.