Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18983 | 5' | -61.7 | NC_004684.1 | + | 42201 | 0.66 | 0.433068 |
Target: 5'- --gGCCGUgGAGcugguGGCCgacgUGGCCGCCg- -3' miRNA: 3'- uagUGGCAgCUU-----CCGG----ACCGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 27411 | 0.66 | 0.433068 |
Target: 5'- -cCGCCGUCGucaaagCUGGCCGCaCCGa -3' miRNA: 3'- uaGUGGCAGCuuccg-GACCGGCG-GGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 9125 | 0.66 | 0.42757 |
Target: 5'- cAUCACCGcCGAggccauggucaagauGcucGGCCUGGCCGacgacaCCGu -3' miRNA: 3'- -UAGUGGCaGCU---------------U---CCGGACCGGCg-----GGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 6013 | 0.66 | 0.423927 |
Target: 5'- -cCAUCGgacgCGguGGCCUuuaGGCCGCCa- -3' miRNA: 3'- uaGUGGCa---GCuuCCGGA---CCGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 28063 | 0.66 | 0.423927 |
Target: 5'- gGUCGgccCCGgCGGuguGGCCgGGCCGCCg- -3' miRNA: 3'- -UAGU---GGCaGCUu--CCGGaCCGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 61812 | 0.66 | 0.423927 |
Target: 5'- cUCAgCCGUgGucggagguggccGGGGCCcGGCCuGCCCAc -3' miRNA: 3'- uAGU-GGCAgC------------UUCCGGaCCGG-CGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 57498 | 0.66 | 0.423927 |
Target: 5'- -aCACCgGUCGAGuGauacgCUGGCCGCCUg -3' miRNA: 3'- uaGUGG-CAGCUUcCg----GACCGGCGGGu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 26360 | 0.66 | 0.414903 |
Target: 5'- gGUCACCGaaUCcuuGAGGCCUuccaGGCCcGCCUg -3' miRNA: 3'- -UAGUGGC--AGc--UUCCGGA----CCGG-CGGGu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 708 | 0.66 | 0.414903 |
Target: 5'- -cCGCCGgUGGAcGGCCUGG-CGCuCCAa -3' miRNA: 3'- uaGUGGCaGCUU-CCGGACCgGCG-GGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 9782 | 0.66 | 0.405997 |
Target: 5'- cUCGCCGUCGAuGGuUUUGGUCaGCUCGc -3' miRNA: 3'- uAGUGGCAGCUuCC-GGACCGG-CGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 51032 | 0.66 | 0.405997 |
Target: 5'- -aCACCaUCGugcgccuggacGAGGCCgGGCUGUCCGg -3' miRNA: 3'- uaGUGGcAGC-----------UUCCGGaCCGGCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 10802 | 0.66 | 0.405997 |
Target: 5'- -gCACCGUagcggcaucCGgcGGCUgGGCCGCaCCGa -3' miRNA: 3'- uaGUGGCA---------GCuuCCGGaCCGGCG-GGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 6615 | 0.66 | 0.405997 |
Target: 5'- cUCACCGgaaccGGCCUGGCCaggGCCg- -3' miRNA: 3'- uAGUGGCagcuuCCGGACCGG---CGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 33194 | 0.66 | 0.397213 |
Target: 5'- cGUCACCGUggccauggcgaCGGAcaGCCcGGCgGCCCAa -3' miRNA: 3'- -UAGUGGCA-----------GCUUc-CGGaCCGgCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 66577 | 0.66 | 0.397212 |
Target: 5'- -cCGCCGcC-AAGGCCUaGCCGCCa- -3' miRNA: 3'- uaGUGGCaGcUUCCGGAcCGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 26641 | 0.66 | 0.397212 |
Target: 5'- -gCGCCGgaacgCGuacaccccGGCCUGaCCGCCCAg -3' miRNA: 3'- uaGUGGCa----GCuu------CCGGACcGGCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 32983 | 0.66 | 0.388551 |
Target: 5'- gGUCAaccgCGUCGAGGGUgaGcaCCGCCCAc -3' miRNA: 3'- -UAGUg---GCAGCUUCCGgaCc-GGCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 16297 | 0.66 | 0.388551 |
Target: 5'- uUCACUGUCGuaucAGaCCgGGCCGCCg- -3' miRNA: 3'- uAGUGGCAGCu---UCcGGaCCGGCGGgu -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 21825 | 0.67 | 0.380015 |
Target: 5'- cUCAUgGgcgCGAucagccGGGCauccaUGGCCGCCCGc -3' miRNA: 3'- uAGUGgCa--GCU------UCCGg----ACCGGCGGGU- -5' |
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18983 | 5' | -61.7 | NC_004684.1 | + | 6122 | 0.67 | 0.380014 |
Target: 5'- --gGCCG-CG-AGGCgCUGGCgGCCUAa -3' miRNA: 3'- uagUGGCaGCuUCCG-GACCGgCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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