miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 5' -61.7 NC_004684.1 + 25508 0.67 0.380014
Target:  5'- -gCAagGUCGGAGGCaccccauugguaCUGGCCGCCg- -3'
miRNA:   3'- uaGUggCAGCUUCCG------------GACCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 6122 0.67 0.380014
Target:  5'- --gGCCG-CG-AGGCgCUGGCgGCCUAa -3'
miRNA:   3'- uagUGGCaGCuUCCG-GACCGgCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 60174 0.67 0.380014
Target:  5'- gGUgGCCcggUGAAGGCCcgcacgGGCCGCCgGg -3'
miRNA:   3'- -UAgUGGca-GCUUCCGGa-----CCGGCGGgU- -5'
18983 5' -61.7 NC_004684.1 + 22626 0.67 0.371605
Target:  5'- -gCGCUGUgGGAGGCC--GCCGCCa- -3'
miRNA:   3'- uaGUGGCAgCUUCCGGacCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 16549 0.67 0.371605
Target:  5'- uUCAUCGUUauGGGCCUGGgCGUCa- -3'
miRNA:   3'- uAGUGGCAGcuUCCGGACCgGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 45236 0.67 0.371604
Target:  5'- -aCGCCGUCGAcuucgccgAGGCCUGGgUGUa-- -3'
miRNA:   3'- uaGUGGCAGCU--------UCCGGACCgGCGggu -5'
18983 5' -61.7 NC_004684.1 + 63857 0.67 0.371604
Target:  5'- uUCACCcugcUGucGGCCgcaaacuagUGGCCGCCCGg -3'
miRNA:   3'- uAGUGGca--GCuuCCGG---------ACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 47910 0.67 0.363322
Target:  5'- -cCACgGUCGgcGGCCUcGGCCaCCUu -3'
miRNA:   3'- uaGUGgCAGCuuCCGGA-CCGGcGGGu -5'
18983 5' -61.7 NC_004684.1 + 49657 0.67 0.363322
Target:  5'- --gACCGcaggCGAAGGCCacGCCaGCCCGa -3'
miRNA:   3'- uagUGGCa---GCUUCCGGacCGG-CGGGU- -5'
18983 5' -61.7 NC_004684.1 + 4817 0.67 0.363322
Target:  5'- uGUgGCCGUgCGcGAGGuCCUGGCCGUagcaggCCAg -3'
miRNA:   3'- -UAgUGGCA-GC-UUCC-GGACCGGCG------GGU- -5'
18983 5' -61.7 NC_004684.1 + 19550 0.67 0.355169
Target:  5'- -gCGCCGggCGGugccaggucuccGGGCCUGGCgucgugcaccUGCCCAg -3'
miRNA:   3'- uaGUGGCa-GCU------------UCCGGACCG----------GCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 43955 0.67 0.355169
Target:  5'- cUCGCCGUCG-AGGCCgagcaucaGCCGUgCGc -3'
miRNA:   3'- uAGUGGCAGCuUCCGGac------CGGCGgGU- -5'
18983 5' -61.7 NC_004684.1 + 67026 0.67 0.346349
Target:  5'- gAUCG-CGcCGGAGGCCuucgccgagguugUGGCCGCCa- -3'
miRNA:   3'- -UAGUgGCaGCUUCCGG-------------ACCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 467 0.67 0.339252
Target:  5'- --gGCCGUCGGucucGGCCaGGUCGCgCAu -3'
miRNA:   3'- uagUGGCAGCUu---CCGGaCCGGCGgGU- -5'
18983 5' -61.7 NC_004684.1 + 55457 0.68 0.33149
Target:  5'- uGUCGCCaagcgcggUGAAGGCCUGGCCGa--- -3'
miRNA:   3'- -UAGUGGca------GCUUCCGGACCGGCgggu -5'
18983 5' -61.7 NC_004684.1 + 23660 0.68 0.33149
Target:  5'- cUgACCGgguacacCGAcGGCCUGGUCGgCCCGg -3'
miRNA:   3'- uAgUGGCa------GCUuCCGGACCGGC-GGGU- -5'
18983 5' -61.7 NC_004684.1 + 23419 0.68 0.331489
Target:  5'- uUCcacuCCG-CGAuGGCCUGGCgGCCUu -3'
miRNA:   3'- uAGu---GGCaGCUuCCGGACCGgCGGGu -5'
18983 5' -61.7 NC_004684.1 + 36368 0.68 0.323859
Target:  5'- -gCACCGccUCGuucuuGGCCaGGCCGCCgGa -3'
miRNA:   3'- uaGUGGC--AGCuu---CCGGaCCGGCGGgU- -5'
18983 5' -61.7 NC_004684.1 + 66447 0.68 0.323859
Target:  5'- -aCACCcgcGUCGc---CCUGGCCGCCCGc -3'
miRNA:   3'- uaGUGG---CAGCuuccGGACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 57485 0.68 0.319344
Target:  5'- -cCACCGUCGAcaagcgccgcacgcaGGuGCCUGcGCCGgauCCCGa -3'
miRNA:   3'- uaGUGGCAGCU---------------UC-CGGAC-CGGC---GGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.