miRNA display CGI


Results 41 - 60 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 5' -61.7 NC_004684.1 + 12883 0.68 0.31636
Target:  5'- -cCGCCGcCGggGaGCCUGcgcucGCCGCCa- -3'
miRNA:   3'- uaGUGGCaGCuuC-CGGAC-----CGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 56041 0.68 0.31636
Target:  5'- -cCACCGU---GGGCCUggaGGCCGCCg- -3'
miRNA:   3'- uaGUGGCAgcuUCCGGA---CCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 6041 0.68 0.316359
Target:  5'- cUCACCGgCGc-GGCCagguUGGaCCGCCCGg -3'
miRNA:   3'- uAGUGGCaGCuuCCGG----ACC-GGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 5682 0.68 0.316359
Target:  5'- gGUCGCgGUggCGAAGGCCuccaUGGCgauuucgcgcgCGCCCAc -3'
miRNA:   3'- -UAGUGgCA--GCUUCCGG----ACCG-----------GCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 12842 0.68 0.308992
Target:  5'- --uGCCGacguggucgCGGAGGCCgaGGCCGCCa- -3'
miRNA:   3'- uagUGGCa--------GCUUCCGGa-CCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 65452 0.68 0.308992
Target:  5'- gAUgACCGUCGcccugguGGCCcugggGGCCGCCa- -3'
miRNA:   3'- -UAgUGGCAGCuu-----CCGGa----CCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 51371 0.68 0.308992
Target:  5'- -cCACCGagGuGAGGCCuUGGCCGUCg- -3'
miRNA:   3'- uaGUGGCagC-UUCCGG-ACCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 50652 0.68 0.301756
Target:  5'- -cCGCCGUCGggGGugcggaCCaGGCgugCGCCCGg -3'
miRNA:   3'- uaGUGGCAGCuuCC------GGaCCG---GCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 7706 0.68 0.301756
Target:  5'- --gGCCGUCGccguGGCgCUGGCCGUgagCCAc -3'
miRNA:   3'- uagUGGCAGCuu--CCG-GACCGGCG---GGU- -5'
18983 5' -61.7 NC_004684.1 + 49286 0.68 0.301756
Target:  5'- -aCACCGgccucgcgcUCGguGGCCUuGCCGUCCAg -3'
miRNA:   3'- uaGUGGC---------AGCuuCCGGAcCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 41660 0.68 0.294652
Target:  5'- -gCGgCGUaCGAAGGCCgGGCCGaCCUc -3'
miRNA:   3'- uaGUgGCA-GCUUCCGGaCCGGC-GGGu -5'
18983 5' -61.7 NC_004684.1 + 40458 0.68 0.294651
Target:  5'- -cCACCGcCGAggcccccaAGGCCaaGGCCGCCg- -3'
miRNA:   3'- uaGUGGCaGCU--------UCCGGa-CCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 31306 0.68 0.294651
Target:  5'- cGUCACCGgCGucGGCCaGGUCGUCUu -3'
miRNA:   3'- -UAGUGGCaGCuuCCGGaCCGGCGGGu -5'
18983 5' -61.7 NC_004684.1 + 15252 0.69 0.287678
Target:  5'- gGUUA-CGUCGAuGGCCUGGCCaacaCCCu -3'
miRNA:   3'- -UAGUgGCAGCUuCCGGACCGGc---GGGu -5'
18983 5' -61.7 NC_004684.1 + 30176 0.69 0.287678
Target:  5'- -aCGCCGUCGgcGGCgagCUGGUgGCCa- -3'
miRNA:   3'- uaGUGGCAGCuuCCG---GACCGgCGGgu -5'
18983 5' -61.7 NC_004684.1 + 36755 0.69 0.280835
Target:  5'- -cCGCCGUCGAuGGUggUGGCCuCCCAg -3'
miRNA:   3'- uaGUGGCAGCUuCCGg-ACCGGcGGGU- -5'
18983 5' -61.7 NC_004684.1 + 40632 0.69 0.278808
Target:  5'- -cCGCCGcgcggccgacgaacUUGggGGCCUGGCCccGCCa- -3'
miRNA:   3'- uaGUGGC--------------AGCuuCCGGACCGG--CGGgu -5'
18983 5' -61.7 NC_004684.1 + 50021 0.69 0.274122
Target:  5'- -gCACCGUCGgcGGCagcgUGGCCgguGCCUg -3'
miRNA:   3'- uaGUGGCAGCuuCCGg---ACCGG---CGGGu -5'
18983 5' -61.7 NC_004684.1 + 42592 0.69 0.267538
Target:  5'- -gCGCCGUUGAucgcguuGGCCUGGUCGUUgGa -3'
miRNA:   3'- uaGUGGCAGCUu------CCGGACCGGCGGgU- -5'
18983 5' -61.7 NC_004684.1 + 57365 0.69 0.25917
Target:  5'- cUCGCCGUCacaggccgagcuguGcGGGCCgacgGuGCCGCCCGc -3'
miRNA:   3'- uAGUGGCAG--------------CuUCCGGa---C-CGGCGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.