miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 5' -61.7 NC_004684.1 + 67026 0.67 0.346349
Target:  5'- gAUCG-CGcCGGAGGCCuucgccgagguugUGGCCGCCa- -3'
miRNA:   3'- -UAGUgGCaGCUUCCGG-------------ACCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 66577 0.66 0.397212
Target:  5'- -cCGCCGcC-AAGGCCUaGCCGCCa- -3'
miRNA:   3'- uaGUGGCaGcUUCCGGAcCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 66447 0.68 0.323859
Target:  5'- -aCACCcgcGUCGc---CCUGGCCGCCCGc -3'
miRNA:   3'- uaGUGG---CAGCuuccGGACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 65878 0.73 0.142814
Target:  5'- cGUCGCCGUUGAGcgcggcgcgcagguuGGCCaccagGGCCGCCgCAc -3'
miRNA:   3'- -UAGUGGCAGCUU---------------CCGGa----CCGGCGG-GU- -5'
18983 5' -61.7 NC_004684.1 + 65452 0.68 0.308992
Target:  5'- gAUgACCGUCGcccugguGGCCcugggGGCCGCCa- -3'
miRNA:   3'- -UAgUGGCAGCuu-----CCGGa----CCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 63857 0.67 0.371604
Target:  5'- uUCACCcugcUGucGGCCgcaaacuagUGGCCGCCCGg -3'
miRNA:   3'- uAGUGGca--GCuuCCGG---------ACCGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 63002 0.75 0.105276
Target:  5'- cGUCACCGgCcAGGGCCUGGCcCGCCg- -3'
miRNA:   3'- -UAGUGGCaGcUUCCGGACCG-GCGGgu -5'
18983 5' -61.7 NC_004684.1 + 61812 0.66 0.423927
Target:  5'- cUCAgCCGUgGucggagguggccGGGGCCcGGCCuGCCCAc -3'
miRNA:   3'- uAGU-GGCAgC------------UUCCGGaCCGG-CGGGU- -5'
18983 5' -61.7 NC_004684.1 + 61412 0.7 0.224987
Target:  5'- -aCGCCGcCGAGGGC--GGCgGCCCGg -3'
miRNA:   3'- uaGUGGCaGCUUCCGgaCCGgCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 60174 0.67 0.380014
Target:  5'- gGUgGCCcggUGAAGGCCcgcacgGGCCGCCgGg -3'
miRNA:   3'- -UAgUGGca-GCUUCCGGa-----CCGGCGGgU- -5'
18983 5' -61.7 NC_004684.1 + 59543 0.7 0.251018
Target:  5'- cAUCGCCGcCGAccggcgcacaccgguGGGCaaGGCCGCCa- -3'
miRNA:   3'- -UAGUGGCaGCU---------------UCCGgaCCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 58389 0.71 0.20858
Target:  5'- -gCACCGcgcgUGGAGGCCUuggcccGGCCGCCgGa -3'
miRNA:   3'- uaGUGGCa---GCUUCCGGA------CCGGCGGgU- -5'
18983 5' -61.7 NC_004684.1 + 58315 0.72 0.178853
Target:  5'- cUCACCGgCGAcgccGGGUCaUGGCgCGCCCGg -3'
miRNA:   3'- uAGUGGCaGCU----UCCGG-ACCG-GCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 57498 0.66 0.423927
Target:  5'- -aCACCgGUCGAGuGauacgCUGGCCGCCUg -3'
miRNA:   3'- uaGUGG-CAGCUUcCg----GACCGGCGGGu -5'
18983 5' -61.7 NC_004684.1 + 57485 0.68 0.319344
Target:  5'- -cCACCGUCGAcaagcgccgcacgcaGGuGCCUGcGCCGgauCCCGa -3'
miRNA:   3'- uaGUGGCAGCU---------------UC-CGGAC-CGGC---GGGU- -5'
18983 5' -61.7 NC_004684.1 + 57365 0.69 0.25917
Target:  5'- cUCGCCGUCacaggccgagcuguGcGGGCCgacgGuGCCGCCCGc -3'
miRNA:   3'- uAGUGGCAG--------------CuUCCGGa---C-CGGCGGGU- -5'
18983 5' -61.7 NC_004684.1 + 56247 0.76 0.080182
Target:  5'- cGUCGCCGUCGucGGCCagGGCCacGCUCAu -3'
miRNA:   3'- -UAGUGGCAGCuuCCGGa-CCGG--CGGGU- -5'
18983 5' -61.7 NC_004684.1 + 56041 0.68 0.31636
Target:  5'- -cCACCGU---GGGCCUggaGGCCGCCg- -3'
miRNA:   3'- uaGUGGCAgcuUCCGGA---CCGGCGGgu -5'
18983 5' -61.7 NC_004684.1 + 55457 0.68 0.33149
Target:  5'- uGUCGCCaagcgcggUGAAGGCCUGGCCGa--- -3'
miRNA:   3'- -UAGUGGca------GCUUCCGGACCGGCgggu -5'
18983 5' -61.7 NC_004684.1 + 51371 0.68 0.308992
Target:  5'- -cCACCGagGuGAGGCCuUGGCCGUCg- -3'
miRNA:   3'- uaGUGGCagC-UUCCGG-ACCGGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.