miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 33200 0.68 0.543446
Target:  5'- aCCUUGGCC-AGCGCGAGcgccuGCGUcggCAg -3'
miRNA:   3'- cGGAGCCGGuUCGCGCUUc----CGCAa--GU- -5'
18984 3' -57.1 NC_004684.1 + 33471 0.67 0.58573
Target:  5'- uGCCUCGGCgGcggcugcgguGGaCGCGgcGGCGg--- -3'
miRNA:   3'- -CGGAGCCGgU----------UC-GCGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 34277 0.69 0.472204
Target:  5'- cGUCUCGGUUgcguuGAGCGUGAgcucGGGCGUg-- -3'
miRNA:   3'- -CGGAGCCGG-----UUCGCGCU----UCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 34551 0.67 0.58573
Target:  5'- gGCCaUGGCCAgcuacgagAGCGCGcuGGCGg--- -3'
miRNA:   3'- -CGGaGCCGGU--------UCGCGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 36857 0.72 0.337879
Target:  5'- aGCgUCGGCacCGGGCGCGGcccuGGCGgcgUCAg -3'
miRNA:   3'- -CGgAGCCG--GUUCGCGCUu---CCGCa--AGU- -5'
18984 3' -57.1 NC_004684.1 + 37721 0.72 0.322203
Target:  5'- gGCCaUGGCC-AGCGCaccGAcGGCGUUCGg -3'
miRNA:   3'- -CGGaGCCGGuUCGCG---CUuCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 38137 0.67 0.617855
Target:  5'- gGCCUCGGggguggucGGCGCGuacAGGGCGUcCAg -3'
miRNA:   3'- -CGGAGCCggu-----UCGCGC---UUCCGCAaGU- -5'
18984 3' -57.1 NC_004684.1 + 39418 0.7 0.433664
Target:  5'- gGCCaacCGGCCuGGGCGCGGcaacugGGGCGcUCGu -3'
miRNA:   3'- -CGGa--GCCGG-UUCGCGCU------UCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 39768 0.69 0.482108
Target:  5'- cUCggCGGCCGAGCGCGAgcacgAGGCa---- -3'
miRNA:   3'- cGGa-GCCGGUUCGCGCU-----UCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 40363 0.66 0.66081
Target:  5'- gGCCUUGGCCuuggGGGCcucgGCGguGGCGgccuUCGg -3'
miRNA:   3'- -CGGAGCCGG----UUCG----CGCuuCCGCa---AGU- -5'
18984 3' -57.1 NC_004684.1 + 40438 0.67 0.58573
Target:  5'- gGCCUUGGUCAgcGGUGCccAGGCGg--- -3'
miRNA:   3'- -CGGAGCCGGU--UCGCGcuUCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 40674 0.66 0.649012
Target:  5'- cGCgCUCGGCCAgcaagguGGCGaCGAacuucagcuGGGCGg--- -3'
miRNA:   3'- -CG-GAGCCGGU-------UCGC-GCU---------UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 40726 0.67 0.628599
Target:  5'- gGCCcccaaguucgUCGGCC--GCGCGgcGGUGaUCAa -3'
miRNA:   3'- -CGG----------AGCCGGuuCGCGCuuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 40758 0.73 0.307076
Target:  5'- aCCUugcUGGCCGAGCGCGAcuGGCGg--- -3'
miRNA:   3'- cGGA---GCCGGUUCGCGCUu-CCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 41429 0.71 0.379452
Target:  5'- gGCCUUGGCCcGGC-CGucGGCGgUCGc -3'
miRNA:   3'- -CGGAGCCGGuUCGcGCuuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 41636 0.67 0.617855
Target:  5'- aCC-CGGCCAGGUG-GAAGGCa---- -3'
miRNA:   3'- cGGaGCCGGUUCGCgCUUCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 41682 0.67 0.58573
Target:  5'- aCCUCGGCaacacccAGCGCGGcgacGGCGUgcgguUCAa -3'
miRNA:   3'- cGGAGCCGgu-----UCGCGCUu---CCGCA-----AGU- -5'
18984 3' -57.1 NC_004684.1 + 42228 0.66 0.692792
Target:  5'- cGCCggugUCGGCaCcGGCGCGAAGaCGUg-- -3'
miRNA:   3'- -CGG----AGCCG-GuUCGCGCUUCcGCAagu -5'
18984 3' -57.1 NC_004684.1 + 42533 0.67 0.575084
Target:  5'- cGCCgUGGUCGGcGUGCuGAcGGCGUUCGg -3'
miRNA:   3'- -CGGaGCCGGUU-CGCG-CUuCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 42966 0.66 0.650085
Target:  5'- uGCCagaGGCCGGGCGUGc-GGCGg--- -3'
miRNA:   3'- -CGGag-CCGGUUCGCGCuuCCGCaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.