miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 16359 0.7 0.44313
Target:  5'- cGCgUCgGGCCcGGCGCGAacaccGGGCGagCGa -3'
miRNA:   3'- -CGgAG-CCGGuUCGCGCU-----UCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 19335 0.74 0.264979
Target:  5'- cGCCgUGGCCGAGCG-GGAGGCGc--- -3'
miRNA:   3'- -CGGaGCCGGUUCGCgCUUCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 19415 0.67 0.607123
Target:  5'- -gCUCGGCCAcG-GCGgcGGCGUa-- -3'
miRNA:   3'- cgGAGCCGGUuCgCGCuuCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 20479 0.66 0.686426
Target:  5'- aCCUCGGCCucguGCGCGuacugcucgaacgucGGGGUGg--- -3'
miRNA:   3'- cGGAGCCGGuu--CGCGC---------------UUCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 21204 0.68 0.564484
Target:  5'- uCCg-GGCCAAGCacGCGcAGGCGcUUCAc -3'
miRNA:   3'- cGGagCCGGUUCG--CGCuUCCGC-AAGU- -5'
18984 3' -57.1 NC_004684.1 + 21384 0.68 0.550782
Target:  5'- cGCCUgcguugcgcagauaCGGCCGGGCGCGcgugccGGGGUGg--- -3'
miRNA:   3'- -CGGA--------------GCCGGUUCGCGC------UUCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 22275 0.7 0.40599
Target:  5'- cGCCUggcggCGGCCAAggcccGCGCGgcGGCGg--- -3'
miRNA:   3'- -CGGA-----GCCGGUU-----CGCGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 22428 0.69 0.512399
Target:  5'- gGCCUCaacGCCAucgccgucGGCGCGgcGGCGaUCc -3'
miRNA:   3'- -CGGAGc--CGGU--------UCGCGCuuCCGCaAGu -5'
18984 3' -57.1 NC_004684.1 + 23136 0.67 0.617855
Target:  5'- -gCUUGGCCAGGC-CGucaccAAGGCGUggCAg -3'
miRNA:   3'- cgGAGCCGGUUCGcGC-----UUCCGCAa-GU- -5'
18984 3' -57.1 NC_004684.1 + 23175 0.7 0.45271
Target:  5'- -gCUCGGCCuuGGUGaUGAAGGCG-UCGa -3'
miRNA:   3'- cgGAGCCGGu-UCGC-GCUUCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 23987 0.66 0.639345
Target:  5'- -gCUCGGUCGAGC-CGG-GGCGgUCGg -3'
miRNA:   3'- cgGAGCCGGUUCGcGCUuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 25287 0.67 0.596412
Target:  5'- gGCCUucCGGCCAcaccAG-GCGgcGGCGgUUCGu -3'
miRNA:   3'- -CGGA--GCCGGU----UCgCGCuuCCGC-AAGU- -5'
18984 3' -57.1 NC_004684.1 + 25557 0.67 0.607123
Target:  5'- aGCCUCGGCgcGGUG-GAAGGUGcgCu -3'
miRNA:   3'- -CGGAGCCGguUCGCgCUUCCGCaaGu -5'
18984 3' -57.1 NC_004684.1 + 25872 0.69 0.472204
Target:  5'- gGCCUCGGCCAGGC-CG--GGCagaacgUCAg -3'
miRNA:   3'- -CGGAGCCGGUUCGcGCuuCCGca----AGU- -5'
18984 3' -57.1 NC_004684.1 + 25960 0.7 0.415091
Target:  5'- cGCCgagcUGGCCAAgcugguGCGCGAAGGCa---- -3'
miRNA:   3'- -CGGa---GCCGGUU------CGCGCUUCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 26537 0.67 0.628599
Target:  5'- cGCCUgggCGGUCAGGC-CGggGuguacGCGUUCc -3'
miRNA:   3'- -CGGA---GCCGGUUCGcGCuuC-----CGCAAGu -5'
18984 3' -57.1 NC_004684.1 + 27904 0.69 0.472204
Target:  5'- gGCC-CGGCCu-GCGCGAguuccuGGGCGa--- -3'
miRNA:   3'- -CGGaGCCGGuuCGCGCU------UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 29920 0.66 0.639345
Target:  5'- uGCuCUCGcuuauggagcuGCC-AGCGUGAAGGUGUcggUCAc -3'
miRNA:   3'- -CG-GAGC-----------CGGuUCGCGCUUCCGCA---AGU- -5'
18984 3' -57.1 NC_004684.1 + 32072 0.69 0.492112
Target:  5'- gGCCUgCGGgUAgaucAGCGCGGAGGUGgugaUCGg -3'
miRNA:   3'- -CGGA-GCCgGU----UCGCGCUUCCGCa---AGU- -5'
18984 3' -57.1 NC_004684.1 + 32096 0.67 0.606051
Target:  5'- aGCgUUGGCCAGGCGguggaguccacacCGGAGGaCGUg-- -3'
miRNA:   3'- -CGgAGCCGGUUCGC-------------GCUUCC-GCAagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.