miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 12065 0.7 0.433664
Target:  5'- cGCCUgGccGCCGAGCGCGAcgAGGUGc--- -3'
miRNA:   3'- -CGGAgC--CGGUUCGCGCU--UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 16359 0.7 0.44313
Target:  5'- cGCgUCgGGCCcGGCGCGAacaccGGGCGagCGa -3'
miRNA:   3'- -CGgAG-CCGGuUCGCGCU-----UCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 66348 0.7 0.45271
Target:  5'- cGCCggggcgggCGGCCAGG-GCGAcgcGGGUGUUgGg -3'
miRNA:   3'- -CGGa-------GCCGGUUCgCGCU---UCCGCAAgU- -5'
18984 3' -57.1 NC_004684.1 + 23175 0.7 0.45271
Target:  5'- -gCUCGGCCuuGGUGaUGAAGGCG-UCGa -3'
miRNA:   3'- cgGAGCCGGu-UCGC-GCUUCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 43710 0.69 0.462403
Target:  5'- cGCgCUCGGCCAcacCGUGGccGGGCuGUUCAc -3'
miRNA:   3'- -CG-GAGCCGGUuc-GCGCU--UCCG-CAAGU- -5'
18984 3' -57.1 NC_004684.1 + 45147 0.69 0.462403
Target:  5'- gGCCUCGGCgAAGU-CGAcGGCGUccUCc -3'
miRNA:   3'- -CGGAGCCGgUUCGcGCUuCCGCA--AGu -5'
18984 3' -57.1 NC_004684.1 + 34277 0.69 0.472204
Target:  5'- cGUCUCGGUUgcguuGAGCGUGAgcucGGGCGUg-- -3'
miRNA:   3'- -CGGAGCCGG-----UUCGCGCU----UCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 25872 0.69 0.472204
Target:  5'- gGCCUCGGCCAGGC-CG--GGCagaacgUCAg -3'
miRNA:   3'- -CGGAGCCGGUUCGcGCuuCCGca----AGU- -5'
18984 3' -57.1 NC_004684.1 + 27904 0.69 0.472204
Target:  5'- gGCC-CGGCCu-GCGCGAguuccuGGGCGa--- -3'
miRNA:   3'- -CGGaGCCGGuuCGCGCU------UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 39768 0.69 0.482108
Target:  5'- cUCggCGGCCGAGCGCGAgcacgAGGCa---- -3'
miRNA:   3'- cGGa-GCCGGUUCGCGCU-----UCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 8830 0.69 0.482108
Target:  5'- -gCUC-GCCGGGCGCGgcGGCGaaCAu -3'
miRNA:   3'- cgGAGcCGGUUCGCGCuuCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 32072 0.69 0.492112
Target:  5'- gGCCUgCGGgUAgaucAGCGCGGAGGUGgugaUCGg -3'
miRNA:   3'- -CGGA-GCCgGU----UCGCGCUUCCGCa---AGU- -5'
18984 3' -57.1 NC_004684.1 + 49713 0.69 0.492112
Target:  5'- cGCgCUCGGC--GGCGC---GGCGUUCAa -3'
miRNA:   3'- -CG-GAGCCGguUCGCGcuuCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 55555 0.69 0.511377
Target:  5'- uCCUCGGCCAGGCcuucaccGCGcuuGGCGa--- -3'
miRNA:   3'- cGGAGCCGGUUCG-------CGCuu-CCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 12107 0.69 0.512399
Target:  5'- gGCCUUGGCCAccgccGcCGCGAAGuccuGCGgggUCAu -3'
miRNA:   3'- -CGGAGCCGGUu----C-GCGCUUC----CGCa--AGU- -5'
18984 3' -57.1 NC_004684.1 + 22428 0.69 0.512399
Target:  5'- gGCCUCaacGCCAucgccgucGGCGCGgcGGCGaUCc -3'
miRNA:   3'- -CGGAGc--CGGU--------UCGCGCuuCCGCaAGu -5'
18984 3' -57.1 NC_004684.1 + 50940 0.69 0.512399
Target:  5'- gGCCUCGuCCAGGCGCacGAuGGUGUg-- -3'
miRNA:   3'- -CGGAGCcGGUUCGCG--CUuCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 852 0.68 0.522672
Target:  5'- uGCCUCGGCgGuguccaggAGCGCcgccAGGGCG-UCGg -3'
miRNA:   3'- -CGGAGCCGgU--------UCGCGc---UUCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 6825 0.68 0.533023
Target:  5'- gGCCUggaggagcUGGCCuacGGCGCGAAgGGCGa--- -3'
miRNA:   3'- -CGGA--------GCCGGu--UCGCGCUU-CCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 33200 0.68 0.543446
Target:  5'- aCCUUGGCC-AGCGCGAGcgccuGCGUcggCAg -3'
miRNA:   3'- cGGAGCCGGuUCGCGCUUc----CGCAa--GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.