miRNA display CGI


Results 21 - 40 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 26537 0.67 0.628599
Target:  5'- cGCCUgggCGGUCAGGC-CGggGuguacGCGUUCc -3'
miRNA:   3'- -CGGA---GCCGGUUCGcGCuuC-----CGCAAGu -5'
18984 3' -57.1 NC_004684.1 + 50329 0.67 0.628599
Target:  5'- cGCC-CGGCCAGGCG-GgcGGCc---- -3'
miRNA:   3'- -CGGaGCCGGUUCGCgCuuCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 10581 0.67 0.628599
Target:  5'- cGCCgaucCGGCUGguucGGCGCGcGAGGUGcgCAa -3'
miRNA:   3'- -CGGa---GCCGGU----UCGCGC-UUCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 40726 0.67 0.628599
Target:  5'- gGCCcccaaguucgUCGGCC--GCGCGgcGGUGaUCAa -3'
miRNA:   3'- -CGG----------AGCCGGuuCGCGCuuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 3706 0.67 0.628599
Target:  5'- cGCUUCGGCCAcuCGUGuucGGCGgccCAg -3'
miRNA:   3'- -CGGAGCCGGUucGCGCuu-CCGCaa-GU- -5'
18984 3' -57.1 NC_004684.1 + 23136 0.67 0.617855
Target:  5'- -gCUUGGCCAGGC-CGucaccAAGGCGUggCAg -3'
miRNA:   3'- cgGAGCCGGUUCGcGC-----UUCCGCAa-GU- -5'
18984 3' -57.1 NC_004684.1 + 41636 0.67 0.617855
Target:  5'- aCC-CGGCCAGGUG-GAAGGCa---- -3'
miRNA:   3'- cGGaGCCGGUUCGCgCUUCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 38137 0.67 0.617855
Target:  5'- gGCCUCGGggguggucGGCGCGuacAGGGCGUcCAg -3'
miRNA:   3'- -CGGAGCCggu-----UCGCGC---UUCCGCAaGU- -5'
18984 3' -57.1 NC_004684.1 + 25557 0.67 0.607123
Target:  5'- aGCCUCGGCgcGGUG-GAAGGUGcgCu -3'
miRNA:   3'- -CGGAGCCGguUCGCgCUUCCGCaaGu -5'
18984 3' -57.1 NC_004684.1 + 8266 0.67 0.607123
Target:  5'- cGCCU-GGCCcAGCGCGcccccGGCGaUCu -3'
miRNA:   3'- -CGGAgCCGGuUCGCGCuu---CCGCaAGu -5'
18984 3' -57.1 NC_004684.1 + 19415 0.67 0.607123
Target:  5'- -gCUCGGCCAcG-GCGgcGGCGUa-- -3'
miRNA:   3'- cgGAGCCGGUuCgCGCuuCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 32096 0.67 0.606051
Target:  5'- aGCgUUGGCCAGGCGguggaguccacacCGGAGGaCGUg-- -3'
miRNA:   3'- -CGgAGCCGGUUCGC-------------GCUUCC-GCAagu -5'
18984 3' -57.1 NC_004684.1 + 25287 0.67 0.596412
Target:  5'- gGCCUucCGGCCAcaccAG-GCGgcGGCGgUUCGu -3'
miRNA:   3'- -CGGA--GCCGGU----UCgCGCuuCCGC-AAGU- -5'
18984 3' -57.1 NC_004684.1 + 65590 0.67 0.596412
Target:  5'- gGCCUCGGUCAugAGCcgcaCGgcGGCGUc-- -3'
miRNA:   3'- -CGGAGCCGGU--UCGc---GCuuCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 43957 0.67 0.596412
Target:  5'- cGCCgucgaGGCCGAGCaucagccguGCGcGGGCGUa-- -3'
miRNA:   3'- -CGGag---CCGGUUCG---------CGCuUCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 56049 0.67 0.595342
Target:  5'- gGCCUggaGGCCGccgucaaGGCGC-AAGGCGUg-- -3'
miRNA:   3'- -CGGAg--CCGGU-------UCGCGcUUCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 41682 0.67 0.58573
Target:  5'- aCCUCGGCaacacccAGCGCGGcgacGGCGUgcgguUCAa -3'
miRNA:   3'- cGGAGCCGgu-----UCGCGCUu---CCGCA-----AGU- -5'
18984 3' -57.1 NC_004684.1 + 40438 0.67 0.58573
Target:  5'- gGCCUUGGUCAgcGGUGCccAGGCGg--- -3'
miRNA:   3'- -CGGAGCCGGU--UCGCGcuUCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 34551 0.67 0.58573
Target:  5'- gGCCaUGGCCAgcuacgagAGCGCGcuGGCGg--- -3'
miRNA:   3'- -CGGaGCCGGU--------UCGCGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 63560 0.67 0.58573
Target:  5'- gGCCUCGcgcccccgaauGCCGgaacugGGCgGCGAAGGCGacCAc -3'
miRNA:   3'- -CGGAGC-----------CGGU------UCG-CGCUUCCGCaaGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.