Results 41 - 60 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18984 | 3' | -57.1 | NC_004684.1 | + | 33471 | 0.67 | 0.58573 |
Target: 5'- uGCCUCGGCgGcggcugcgguGGaCGCGgcGGCGg--- -3' miRNA: 3'- -CGGAGCCGgU----------UC-GCGCuuCCGCaagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 41682 | 0.67 | 0.58573 |
Target: 5'- aCCUCGGCaacacccAGCGCGGcgacGGCGUgcgguUCAa -3' miRNA: 3'- cGGAGCCGgu-----UCGCGCUu---CCGCA-----AGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 40438 | 0.67 | 0.58573 |
Target: 5'- gGCCUUGGUCAgcGGUGCccAGGCGg--- -3' miRNA: 3'- -CGGAGCCGGU--UCGCGcuUCCGCaagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 43623 | 0.67 | 0.575084 |
Target: 5'- gGCCacggugUGGCCGAGCGCGGuga-GUUCGu -3' miRNA: 3'- -CGGa-----GCCGGUUCGCGCUuccgCAAGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 42533 | 0.67 | 0.575084 |
Target: 5'- cGCCgUGGUCGGcGUGCuGAcGGCGUUCGg -3' miRNA: 3'- -CGGaGCCGGUU-CGCG-CUuCCGCAAGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 3805 | 0.67 | 0.571899 |
Target: 5'- cGCCUUGGCgGucaaggaucugcugGGCGCGuucGGCGUg-- -3' miRNA: 3'- -CGGAGCCGgU--------------UCGCGCuu-CCGCAagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 6222 | 0.68 | 0.564484 |
Target: 5'- aUCUCGGCCAGcuGgGCGGccAGGCcUUCGa -3' miRNA: 3'- cGGAGCCGGUU--CgCGCU--UCCGcAAGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 61197 | 0.68 | 0.564484 |
Target: 5'- gGCCUCggcguacaccuGGCCGuuCGCGucGGCGaUCAg -3' miRNA: 3'- -CGGAG-----------CCGGUucGCGCuuCCGCaAGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 21204 | 0.68 | 0.564484 |
Target: 5'- uCCg-GGCCAAGCacGCGcAGGCGcUUCAc -3' miRNA: 3'- cGGagCCGGUUCG--CGCuUCCGC-AAGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 47843 | 0.68 | 0.553935 |
Target: 5'- cGCCUgaCGGCacguAGCGCGAaccggAGGCGg--- -3' miRNA: 3'- -CGGA--GCCGgu--UCGCGCU-----UCCGCaagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 21384 | 0.68 | 0.550782 |
Target: 5'- cGCCUgcguugcgcagauaCGGCCGGGCGCGcgugccGGGGUGg--- -3' miRNA: 3'- -CGGA--------------GCCGGUUCGCGC------UUCCGCaagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 33200 | 0.68 | 0.543446 |
Target: 5'- aCCUUGGCC-AGCGCGAGcgccuGCGUcggCAg -3' miRNA: 3'- cGGAGCCGGuUCGCGCUUc----CGCAa--GU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 6825 | 0.68 | 0.533023 |
Target: 5'- gGCCUggaggagcUGGCCuacGGCGCGAAgGGCGa--- -3' miRNA: 3'- -CGGA--------GCCGGu--UCGCGCUU-CCGCaagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 852 | 0.68 | 0.522672 |
Target: 5'- uGCCUCGGCgGuguccaggAGCGCcgccAGGGCG-UCGg -3' miRNA: 3'- -CGGAGCCGgU--------UCGCGc---UUCCGCaAGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 12107 | 0.69 | 0.512399 |
Target: 5'- gGCCUUGGCCAccgccGcCGCGAAGuccuGCGgggUCAu -3' miRNA: 3'- -CGGAGCCGGUu----C-GCGCUUC----CGCa--AGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 22428 | 0.69 | 0.512399 |
Target: 5'- gGCCUCaacGCCAucgccgucGGCGCGgcGGCGaUCc -3' miRNA: 3'- -CGGAGc--CGGU--------UCGCGCuuCCGCaAGu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 50940 | 0.69 | 0.512399 |
Target: 5'- gGCCUCGuCCAGGCGCacGAuGGUGUg-- -3' miRNA: 3'- -CGGAGCcGGUUCGCG--CUuCCGCAagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 55555 | 0.69 | 0.511377 |
Target: 5'- uCCUCGGCCAGGCcuucaccGCGcuuGGCGa--- -3' miRNA: 3'- cGGAGCCGGUUCG-------CGCuu-CCGCaagu -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 49713 | 0.69 | 0.492112 |
Target: 5'- cGCgCUCGGC--GGCGC---GGCGUUCAa -3' miRNA: 3'- -CG-GAGCCGguUCGCGcuuCCGCAAGU- -5' |
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18984 | 3' | -57.1 | NC_004684.1 | + | 32072 | 0.69 | 0.492112 |
Target: 5'- gGCCUgCGGgUAgaucAGCGCGGAGGUGgugaUCGg -3' miRNA: 3'- -CGGA-GCCgGU----UCGCGCUUCCGCa---AGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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