miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 460 0.74 0.245744
Target:  5'- gGUCUCGGCCAGGuCGCGcauGGCcaUCAg -3'
miRNA:   3'- -CGGAGCCGGUUC-GCGCuu-CCGcaAGU- -5'
18984 3' -57.1 NC_004684.1 + 852 0.68 0.522672
Target:  5'- uGCCUCGGCgGuguccaggAGCGCcgccAGGGCG-UCGg -3'
miRNA:   3'- -CGGAGCCGgU--------UCGCGc---UUCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 890 0.66 0.682173
Target:  5'- cGCCaCGGCgAGGUGCagguGAGGGCcaUCAu -3'
miRNA:   3'- -CGGaGCCGgUUCGCG----CUUCCGcaAGU- -5'
18984 3' -57.1 NC_004684.1 + 1953 0.67 0.58573
Target:  5'- cCUUCGGCCAGGUggauauGCGGcccGGCGUUg- -3'
miRNA:   3'- cGGAGCCGGUUCG------CGCUu--CCGCAAgu -5'
18984 3' -57.1 NC_004684.1 + 3706 0.67 0.628599
Target:  5'- cGCUUCGGCCAcuCGUGuucGGCGgccCAg -3'
miRNA:   3'- -CGGAGCCGGUucGCGCuu-CCGCaa-GU- -5'
18984 3' -57.1 NC_004684.1 + 3805 0.67 0.571899
Target:  5'- cGCCUUGGCgGucaaggaucugcugGGCGCGuucGGCGUg-- -3'
miRNA:   3'- -CGGAGCCGgU--------------UCGCGCuu-CCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 5831 0.66 0.661881
Target:  5'- cCCUUGGCCguccacuuguggauGgcgaacggcaucugcGGCGCGAGGGCGcgCu -3'
miRNA:   3'- cGGAGCCGG--------------U---------------UCGCGCUUCCGCaaGu -5'
18984 3' -57.1 NC_004684.1 + 6222 0.68 0.564484
Target:  5'- aUCUCGGCCAGcuGgGCGGccAGGCcUUCGa -3'
miRNA:   3'- cGGAGCCGGUU--CgCGCU--UCCGcAAGU- -5'
18984 3' -57.1 NC_004684.1 + 6528 1.1 0.000686
Target:  5'- cGCCUCGGCCAAGCGCGAAGGCGUUCAc -3'
miRNA:   3'- -CGGAGCCGGUUCGCGCUUCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 6825 0.68 0.533023
Target:  5'- gGCCUggaggagcUGGCCuacGGCGCGAAgGGCGa--- -3'
miRNA:   3'- -CGGA--------GCCGGu--UCGCGCUU-CCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 8266 0.67 0.607123
Target:  5'- cGCCU-GGCCcAGCGCGcccccGGCGaUCu -3'
miRNA:   3'- -CGGAgCCGGuUCGCGCuu---CCGCaAGu -5'
18984 3' -57.1 NC_004684.1 + 8830 0.69 0.482108
Target:  5'- -gCUC-GCCGGGCGCGgcGGCGaaCAu -3'
miRNA:   3'- cgGAGcCGGUUCGCGCuuCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 10581 0.67 0.628599
Target:  5'- cGCCgaucCGGCUGguucGGCGCGcGAGGUGcgCAa -3'
miRNA:   3'- -CGGa---GCCGGU----UCGCGC-UUCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 12065 0.7 0.433664
Target:  5'- cGCCUgGccGCCGAGCGCGAcgAGGUGc--- -3'
miRNA:   3'- -CGGAgC--CGGUUCGCGCU--UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 12107 0.69 0.512399
Target:  5'- gGCCUUGGCCAccgccGcCGCGAAGuccuGCGgggUCAu -3'
miRNA:   3'- -CGGAGCCGGUu----C-GCGCUUC----CGCa--AGU- -5'
18984 3' -57.1 NC_004684.1 + 13122 0.66 0.650085
Target:  5'- aGCCgacCGGCCcGGCGaCGuaaccGGGCGcgUCGg -3'
miRNA:   3'- -CGGa--GCCGGuUCGC-GCu----UCCGCa-AGU- -5'
18984 3' -57.1 NC_004684.1 + 13362 0.75 0.227682
Target:  5'- aGCCaccggCGGCCAccAGCGCGcuGGCGgUCAc -3'
miRNA:   3'- -CGGa----GCCGGU--UCGCGCuuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 13561 0.7 0.40599
Target:  5'- gGCCaUCGGCUAcuGCGUcGAGGCGggCAu -3'
miRNA:   3'- -CGG-AGCCGGUu-CGCGcUUCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 15240 0.7 0.415091
Target:  5'- gGCggCGGCCAGcuGCGCGcuGGCGUggaUCAg -3'
miRNA:   3'- -CGgaGCCGGUU--CGCGCuuCCGCA---AGU- -5'
18984 3' -57.1 NC_004684.1 + 15517 0.72 0.314571
Target:  5'- cGCCcggGGCCGGGCGCuGGAGGCGc--- -3'
miRNA:   3'- -CGGag-CCGGUUCGCG-CUUCCGCaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.