miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 66510 0.71 0.370869
Target:  5'- gGCCUCgcgGGCCGccuucAGCGCGGcccGGCGggCAc -3'
miRNA:   3'- -CGGAG---CCGGU-----UCGCGCUu--CCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 66348 0.7 0.45271
Target:  5'- cGCCggggcgggCGGCCAGG-GCGAcgcGGGUGUUgGg -3'
miRNA:   3'- -CGGa-------GCCGGUUCgCGCU---UCCGCAAgU- -5'
18984 3' -57.1 NC_004684.1 + 66023 0.72 0.337879
Target:  5'- gGCgUCGGCCAGG-GUGuuGGCGUuggUCAg -3'
miRNA:   3'- -CGgAGCCGGUUCgCGCuuCCGCA---AGU- -5'
18984 3' -57.1 NC_004684.1 + 65761 0.66 0.682173
Target:  5'- gGCgUUGGCCGccGCGCGccGGUGggCGc -3'
miRNA:   3'- -CGgAGCCGGUu-CGCGCuuCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 65590 0.67 0.596412
Target:  5'- gGCCUCGGUCAugAGCcgcaCGgcGGCGUc-- -3'
miRNA:   3'- -CGGAGCCGGU--UCGc---GCuuCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 64238 0.85 0.042549
Target:  5'- gGCCUCGGCCAGGCGCu-GGGUGUUg- -3'
miRNA:   3'- -CGGAGCCGGUUCGCGcuUCCGCAAgu -5'
18984 3' -57.1 NC_004684.1 + 63579 0.66 0.671509
Target:  5'- uCCaUCGGCCugcgcGGCGCGgcGGUGg--- -3'
miRNA:   3'- cGG-AGCCGGu----UCGCGCuuCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 63560 0.67 0.58573
Target:  5'- gGCCUCGcgcccccgaauGCCGgaacugGGCgGCGAAGGCGacCAc -3'
miRNA:   3'- -CGGAGC-----------CGGU------UCG-CGCUUCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 63452 0.73 0.278468
Target:  5'- cGCgUCGGCCGcucGGUGCGcuGGGCGgUCAc -3'
miRNA:   3'- -CGgAGCCGGU---UCGCGCu-UCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 62593 0.66 0.691732
Target:  5'- uGCCguugcggUCGGCCAccGCGCcGAGGCGcUUg -3'
miRNA:   3'- -CGG-------AGCCGGUu-CGCGcUUCCGCaAGu -5'
18984 3' -57.1 NC_004684.1 + 62497 0.66 0.650085
Target:  5'- aCCUgGGgC-AGCGCGAGGGCa---- -3'
miRNA:   3'- cGGAgCCgGuUCGCGCUUCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 61347 0.67 0.58573
Target:  5'- gGUggCGGCCAGGUgaaugGUGguGGCGUUCGa -3'
miRNA:   3'- -CGgaGCCGGUUCG-----CGCuuCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 61197 0.68 0.564484
Target:  5'- gGCCUCggcguacaccuGGCCGuuCGCGucGGCGaUCAg -3'
miRNA:   3'- -CGGAG-----------CCGGUucGCGCuuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 60317 0.77 0.161986
Target:  5'- gGCCUCGGCaaugcguuCGAGCGCGAucaccGcGCGUUCGg -3'
miRNA:   3'- -CGGAGCCG--------GUUCGCGCUu----C-CGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 58060 0.66 0.68855
Target:  5'- uCCUCGGCCAgcagcgugcgcaccAGCcgcaGCGAgcaccgcAGGCGgUCGg -3'
miRNA:   3'- cGGAGCCGGU--------------UCG----CGCU-------UCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 56049 0.67 0.595342
Target:  5'- gGCCUggaGGCCGccgucaaGGCGC-AAGGCGUg-- -3'
miRNA:   3'- -CGGAg--CCGGU-------UCGCGcUUCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 55555 0.69 0.511377
Target:  5'- uCCUCGGCCAGGCcuucaccGCGcuuGGCGa--- -3'
miRNA:   3'- cGGAGCCGGUUCG-------CGCuu-CCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 52181 0.66 0.682173
Target:  5'- gGCCUggucgacgUGGCCGguGGCaUGGagcGGGCGUUCAa -3'
miRNA:   3'- -CGGA--------GCCGGU--UCGcGCU---UCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 51543 0.66 0.639345
Target:  5'- gGCCUCGGCCAccgGGCGCauGAGcuacGGCc---- -3'
miRNA:   3'- -CGGAGCCGGU---UCGCG--CUU----CCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 50940 0.69 0.512399
Target:  5'- gGCCUCGuCCAGGCGCacGAuGGUGUg-- -3'
miRNA:   3'- -CGGAGCcGGUUCGCG--CUuCCGCAagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.