miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 6222 0.68 0.564484
Target:  5'- aUCUCGGCCAGcuGgGCGGccAGGCcUUCGa -3'
miRNA:   3'- cGGAGCCGGUU--CgCGCU--UCCGcAAGU- -5'
18984 3' -57.1 NC_004684.1 + 45147 0.69 0.462403
Target:  5'- gGCCUCGGCgAAGU-CGAcGGCGUccUCc -3'
miRNA:   3'- -CGGAGCCGgUUCGcGCUuCCGCA--AGu -5'
18984 3' -57.1 NC_004684.1 + 25872 0.69 0.472204
Target:  5'- gGCCUCGGCCAGGC-CG--GGCagaacgUCAg -3'
miRNA:   3'- -CGGAGCCGGUUCGcGCuuCCGca----AGU- -5'
18984 3' -57.1 NC_004684.1 + 27904 0.69 0.472204
Target:  5'- gGCC-CGGCCu-GCGCGAguuccuGGGCGa--- -3'
miRNA:   3'- -CGGaGCCGGuuCGCGCU------UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 49713 0.69 0.492112
Target:  5'- cGCgCUCGGC--GGCGC---GGCGUUCAa -3'
miRNA:   3'- -CG-GAGCCGguUCGCGcuuCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 50940 0.69 0.512399
Target:  5'- gGCCUCGuCCAGGCGCacGAuGGUGUg-- -3'
miRNA:   3'- -CGGAGCcGGUUCGCG--CUuCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 22428 0.69 0.512399
Target:  5'- gGCCUCaacGCCAucgccgucGGCGCGgcGGCGaUCc -3'
miRNA:   3'- -CGGAGc--CGGU--------UCGCGCuuCCGCaAGu -5'
18984 3' -57.1 NC_004684.1 + 6825 0.68 0.533023
Target:  5'- gGCCUggaggagcUGGCCuacGGCGCGAAgGGCGa--- -3'
miRNA:   3'- -CGGA--------GCCGGu--UCGCGCUU-CCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 47843 0.68 0.553935
Target:  5'- cGCCUgaCGGCacguAGCGCGAaccggAGGCGg--- -3'
miRNA:   3'- -CGGA--GCCGgu--UCGCGCU-----UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 66348 0.7 0.45271
Target:  5'- cGCCggggcgggCGGCCAGG-GCGAcgcGGGUGUUgGg -3'
miRNA:   3'- -CGGa-------GCCGGUUCgCGCU---UCCGCAAgU- -5'
18984 3' -57.1 NC_004684.1 + 12065 0.7 0.433664
Target:  5'- cGCCUgGccGCCGAGCGCGAcgAGGUGc--- -3'
miRNA:   3'- -CGGAgC--CGGUUCGCGCU--UCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 25960 0.7 0.415091
Target:  5'- cGCCgagcUGGCCAAgcugguGCGCGAAGGCa---- -3'
miRNA:   3'- -CGGa---GCCGGUU------CGCGCUUCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 60317 0.77 0.161986
Target:  5'- gGCCUCGGCaaugcguuCGAGCGCGAucaccGcGCGUUCGg -3'
miRNA:   3'- -CGGAGCCG--------GUUCGCGCUu----C-CGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 19335 0.74 0.264979
Target:  5'- cGCCgUGGCCGAGCG-GGAGGCGc--- -3'
miRNA:   3'- -CGGaGCCGGUUCGCgCUUCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 15517 0.72 0.314571
Target:  5'- cGCCcggGGCCGGGCGCuGGAGGCGc--- -3'
miRNA:   3'- -CGGag-CCGGUUCGCG-CUUCCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 66023 0.72 0.337879
Target:  5'- gGCgUCGGCCAGG-GUGuuGGCGUuggUCAg -3'
miRNA:   3'- -CGgAGCCGGUUCgCGCuuCCGCA---AGU- -5'
18984 3' -57.1 NC_004684.1 + 66510 0.71 0.370869
Target:  5'- gGCCUCgcgGGCCGccuucAGCGCGGcccGGCGggCAc -3'
miRNA:   3'- -CGGAG---CCGGU-----UCGCGCUu--CCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 46285 0.71 0.370869
Target:  5'- cGUCgcggCGGCCGAGCGCGuugcGGCGcUUg -3'
miRNA:   3'- -CGGa---GCCGGUUCGCGCuu--CCGCaAGu -5'
18984 3' -57.1 NC_004684.1 + 13561 0.7 0.40599
Target:  5'- gGCCaUCGGCUAcuGCGUcGAGGCGggCAu -3'
miRNA:   3'- -CGG-AGCCGGUu-CGCGcUUCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 22275 0.7 0.40599
Target:  5'- cGCCUggcggCGGCCAAggcccGCGCGgcGGCGg--- -3'
miRNA:   3'- -CGGA-----GCCGGUU-----CGCGCuuCCGCaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.