miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 3' -57.1 NC_004684.1 + 6528 1.1 0.000686
Target:  5'- cGCCUCGGCCAAGCGCGAAGGCGUUCAc -3'
miRNA:   3'- -CGGAGCCGGUUCGCGCUUCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 55555 0.69 0.511377
Target:  5'- uCCUCGGCCAGGCcuucaccGCGcuuGGCGa--- -3'
miRNA:   3'- cGGAGCCGGUUCG-------CGCuu-CCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 852 0.68 0.522672
Target:  5'- uGCCUCGGCgGuguccaggAGCGCcgccAGGGCG-UCGg -3'
miRNA:   3'- -CGGAGCCGgU--------UCGCGc---UUCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 58060 0.66 0.68855
Target:  5'- uCCUCGGCCAgcagcgugcgcaccAGCcgcaGCGAgcaccgcAGGCGgUCGg -3'
miRNA:   3'- cGGAGCCGGU--------------UCG----CGCU-------UCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 40758 0.73 0.307076
Target:  5'- aCCUugcUGGCCGAGCGCGAcuGGCGg--- -3'
miRNA:   3'- cGGA---GCCGGUUCGCGCUu-CCGCaagu -5'
18984 3' -57.1 NC_004684.1 + 37721 0.72 0.322203
Target:  5'- gGCCaUGGCC-AGCGCaccGAcGGCGUUCGg -3'
miRNA:   3'- -CGGaGCCGGuUCGCG---CUuCCGCAAGU- -5'
18984 3' -57.1 NC_004684.1 + 41429 0.71 0.379452
Target:  5'- gGCCUUGGCCcGGC-CGucGGCGgUCGc -3'
miRNA:   3'- -CGGAGCCGGuUCGcGCuuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 15240 0.7 0.415091
Target:  5'- gGCggCGGCCAGcuGCGCGcuGGCGUggaUCAg -3'
miRNA:   3'- -CGgaGCCGGUU--CGCGCuuCCGCA---AGU- -5'
18984 3' -57.1 NC_004684.1 + 23175 0.7 0.45271
Target:  5'- -gCUCGGCCuuGGUGaUGAAGGCG-UCGa -3'
miRNA:   3'- cgGAGCCGGu-UCGC-GCUUCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 32072 0.69 0.492112
Target:  5'- gGCCUgCGGgUAgaucAGCGCGGAGGUGgugaUCGg -3'
miRNA:   3'- -CGGA-GCCgGU----UCGCGCUUCCGCa---AGU- -5'
18984 3' -57.1 NC_004684.1 + 34277 0.69 0.472204
Target:  5'- cGUCUCGGUUgcguuGAGCGUGAgcucGGGCGUg-- -3'
miRNA:   3'- -CGGAGCCGG-----UUCGCGCU----UCCGCAagu -5'
18984 3' -57.1 NC_004684.1 + 16359 0.7 0.44313
Target:  5'- cGCgUCgGGCCcGGCGCGAacaccGGGCGagCGa -3'
miRNA:   3'- -CGgAG-CCGGuUCGCGCU-----UCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 13362 0.75 0.227682
Target:  5'- aGCCaccggCGGCCAccAGCGCGcuGGCGgUCAc -3'
miRNA:   3'- -CGGa----GCCGGU--UCGCGCuuCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 8830 0.69 0.482108
Target:  5'- -gCUC-GCCGGGCGCGgcGGCGaaCAu -3'
miRNA:   3'- cgGAGcCGGUUCGCGCuuCCGCaaGU- -5'
18984 3' -57.1 NC_004684.1 + 460 0.74 0.245744
Target:  5'- gGUCUCGGCCAGGuCGCGcauGGCcaUCAg -3'
miRNA:   3'- -CGGAGCCGGUUC-GCGCuu-CCGcaAGU- -5'
18984 3' -57.1 NC_004684.1 + 39418 0.7 0.433664
Target:  5'- gGCCaacCGGCCuGGGCGCGGcaacugGGGCGcUCGu -3'
miRNA:   3'- -CGGa--GCCGG-UUCGCGCU------UCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 39768 0.69 0.482108
Target:  5'- cUCggCGGCCGAGCGCGAgcacgAGGCa---- -3'
miRNA:   3'- cGGa-GCCGGUUCGCGCU-----UCCGcaagu -5'
18984 3' -57.1 NC_004684.1 + 12107 0.69 0.512399
Target:  5'- gGCCUUGGCCAccgccGcCGCGAAGuccuGCGgggUCAu -3'
miRNA:   3'- -CGGAGCCGGUu----C-GCGCUUC----CGCa--AGU- -5'
18984 3' -57.1 NC_004684.1 + 63452 0.73 0.278468
Target:  5'- cGCgUCGGCCGcucGGUGCGcuGGGCGgUCAc -3'
miRNA:   3'- -CGgAGCCGGU---UCGCGCu-UCCGCaAGU- -5'
18984 3' -57.1 NC_004684.1 + 36857 0.72 0.337879
Target:  5'- aGCgUCGGCacCGGGCGCGGcccuGGCGgcgUCAg -3'
miRNA:   3'- -CGgAGCCG--GUUCGCGCUu---CCGCa--AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.