Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18984 | 5' | -54.3 | NC_004684.1 | + | 23993 | 0.68 | 0.694222 |
Target: 5'- aGCcGU-CGCCa-GGCCAGCagUUCGCCGa -3' miRNA: 3'- -CGaCAuGUGGagCCGGUUG--AAGCGGU- -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 62294 | 0.68 | 0.694222 |
Target: 5'- cGCUgGUugGCCaggaCGGCaaCGugUUCGCCAu -3' miRNA: 3'- -CGA-CAugUGGa---GCCG--GUugAAGCGGU- -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 60347 | 0.68 | 0.683396 |
Target: 5'- ----cGCGCgUUCGGCCAGCggUGCCAg -3' miRNA: 3'- cgacaUGUG-GAGCCGGUUGaaGCGGU- -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 18989 | 0.68 | 0.683396 |
Target: 5'- gGCg--GCaAUCUCGGCCAGC-UCGCgCAg -3' miRNA: 3'- -CGacaUG-UGGAGCCGGUUGaAGCG-GU- -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 2892 | 0.68 | 0.683396 |
Target: 5'- aGCUucUugGCCUCGGCgAACUcgaacUCGCUg -3' miRNA: 3'- -CGAc-AugUGGAGCCGgUUGA-----AGCGGu -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 36064 | 0.68 | 0.683396 |
Target: 5'- aCUGUGCGCCa-GGCCuGCguggagUCGCUg -3' miRNA: 3'- cGACAUGUGGagCCGGuUGa-----AGCGGu -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 54305 | 0.69 | 0.66161 |
Target: 5'- uGCUGgcCgACCUCGGCCccgAGCaggcCGCCGg -3' miRNA: 3'- -CGACauG-UGGAGCCGG---UUGaa--GCGGU- -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 41166 | 0.69 | 0.66161 |
Target: 5'- aGgUGUACACCgaguuguccUCGGuCCAGCUgccuUCGUCGg -3' miRNA: 3'- -CgACAUGUGG---------AGCC-GGUUGA----AGCGGU- -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 2537 | 0.69 | 0.660517 |
Target: 5'- aGCUGgcCGCCcaggcgggcgaugUCGGCCuug-UCGCCGg -3' miRNA: 3'- -CGACauGUGG-------------AGCCGGuugaAGCGGU- -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 8414 | 0.69 | 0.650671 |
Target: 5'- cGCUGgcgcGCACCUCuuCCGGCgucagCGCCAa -3' miRNA: 3'- -CGACa---UGUGGAGccGGUUGaa---GCGGU- -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 27775 | 0.69 | 0.639715 |
Target: 5'- gGCUGUACACCcCGcCCGACggugCGCg- -3' miRNA: 3'- -CGACAUGUGGaGCcGGUUGaa--GCGgu -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 32907 | 0.69 | 0.628752 |
Target: 5'- cGCgGUugACCUCGGCgAcGCUgcacaGCCAu -3' miRNA: 3'- -CGaCAugUGGAGCCGgU-UGAag---CGGU- -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 6081 | 0.69 | 0.628752 |
Target: 5'- --gGUGCGCCUgagccaGGCCGggACUUCGCUc -3' miRNA: 3'- cgaCAUGUGGAg-----CCGGU--UGAAGCGGu -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 52967 | 0.69 | 0.617792 |
Target: 5'- cGUUG-ACcCCUUGGCCAGCagUUCGCgCAg -3' miRNA: 3'- -CGACaUGuGGAGCCGGUUG--AAGCG-GU- -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 64839 | 0.69 | 0.617792 |
Target: 5'- cCUG-GCACCagcUCGGCCAGCaggUCgGCCAc -3' miRNA: 3'- cGACaUGUGG---AGCCGGUUGa--AG-CGGU- -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 64882 | 0.69 | 0.606845 |
Target: 5'- ----aGCACCaacggcgUGGUCAGCUUCGCCGa -3' miRNA: 3'- cgacaUGUGGa------GCCGGUUGAAGCGGU- -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 62542 | 0.69 | 0.606845 |
Target: 5'- cGCUGgccaGCAgCUCGuCCAGCUUgGCCu -3' miRNA: 3'- -CGACa---UGUgGAGCcGGUUGAAgCGGu -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 36108 | 0.7 | 0.595919 |
Target: 5'- cGCgguggGUGCGCCUgcUGGCC---UUCGCCAc -3' miRNA: 3'- -CGa----CAUGUGGA--GCCGGuugAAGCGGU- -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 11407 | 0.7 | 0.595919 |
Target: 5'- cGCcgacCACCUaccCGGCCGcccACUUCGCCAa -3' miRNA: 3'- -CGacauGUGGA---GCCGGU---UGAAGCGGU- -5' |
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18984 | 5' | -54.3 | NC_004684.1 | + | 36305 | 0.7 | 0.585024 |
Target: 5'- cGCUGUcCACCcggUGGaCCAACaacUCGCCGg -3' miRNA: 3'- -CGACAuGUGGa--GCC-GGUUGa--AGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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