miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 5' -54.3 NC_004684.1 + 16115 0.67 0.777741
Target:  5'- aGCUGgACGCCUaCGccGCCAGCaUCGgCAu -3'
miRNA:   3'- -CGACaUGUGGA-GC--CGGUUGaAGCgGU- -5'
18984 5' -54.3 NC_004684.1 + 57285 0.67 0.777741
Target:  5'- cCUGUgacggcgagccGCACCcCGGCCAGCccUGCCc -3'
miRNA:   3'- cGACA-----------UGUGGaGCCGGUUGaaGCGGu -5'
18984 5' -54.3 NC_004684.1 + 34173 0.67 0.777741
Target:  5'- cGUUGUucGCGCCcgcCGcGCCAGggUCGCCGg -3'
miRNA:   3'- -CGACA--UGUGGa--GC-CGGUUgaAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 54018 0.67 0.767706
Target:  5'- cGUUGUGCcuCCUCGGCCuucguggcggGugUgccCGCCGu -3'
miRNA:   3'- -CGACAUGu-GGAGCCGG----------UugAa--GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 21090 0.67 0.767706
Target:  5'- aGCUauggGUGCGCCgcaggaUCgGGCCGACcugCGCCGc -3'
miRNA:   3'- -CGA----CAUGUGG------AG-CCGGUUGaa-GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 19682 0.67 0.761618
Target:  5'- ----aGCACCUCGGCCGccggACUgggcaggugcacgaCGCCAg -3'
miRNA:   3'- cgacaUGUGGAGCCGGU----UGAa-------------GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 23156 0.67 0.757533
Target:  5'- gGCgucgaACCggUUGGCCAGCUUgGCCAg -3'
miRNA:   3'- -CGacaugUGG--AGCCGGUUGAAgCGGU- -5'
18984 5' -54.3 NC_004684.1 + 6788 0.67 0.757533
Target:  5'- cGCcgGUGCACUggacgaCGGCCAcuACgaCGCCGu -3'
miRNA:   3'- -CGa-CAUGUGGa-----GCCGGU--UGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 60447 0.67 0.757533
Target:  5'- cGCcggGUuCgACCUCGGCCAGCa-UGCCGg -3'
miRNA:   3'- -CGa--CAuG-UGGAGCCGGUUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 26303 0.67 0.757533
Target:  5'- --gGUACGCagCUCGGCCAGgc-CGCCGg -3'
miRNA:   3'- cgaCAUGUG--GAGCCGGUUgaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 40574 0.67 0.757533
Target:  5'- uGCUG-GCGCaCUCGGCgCAGac-CGCCGa -3'
miRNA:   3'- -CGACaUGUG-GAGCCG-GUUgaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 10731 0.67 0.747233
Target:  5'- aCUGgGCAgcuccucguCCUCGGCCAGCa-CGCCc -3'
miRNA:   3'- cGACaUGU---------GGAGCCGGUUGaaGCGGu -5'
18984 5' -54.3 NC_004684.1 + 66557 0.67 0.747233
Target:  5'- cGUUGUGCGCCUCa-CCGGaauugCGCCAc -3'
miRNA:   3'- -CGACAUGUGGAGccGGUUgaa--GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 67085 0.67 0.736818
Target:  5'- gGC-GUugGCCUcggCGGCCAGCgaacucuugUGCCAg -3'
miRNA:   3'- -CGaCAugUGGA---GCCGGUUGaa-------GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 32397 0.67 0.736818
Target:  5'- uGgUGUGCACCggcgucaGGCaCAGCgccgagCGCCAa -3'
miRNA:   3'- -CgACAUGUGGag-----CCG-GUUGaa----GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 60957 0.67 0.726297
Target:  5'- --gGUGCGCaucgcgcuccCGGCCGACaUCGCCGc -3'
miRNA:   3'- cgaCAUGUGga--------GCCGGUUGaAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 54416 0.67 0.726297
Target:  5'- cGCUGUGCuaugcCCUCGGaauguCAGC--CGCCAa -3'
miRNA:   3'- -CGACAUGu----GGAGCCg----GUUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 52197 0.67 0.726297
Target:  5'- cGCgGUGCACCUgcugggccUGGUCGACgUgGCCGg -3'
miRNA:   3'- -CGaCAUGUGGA--------GCCGGUUGaAgCGGU- -5'
18984 5' -54.3 NC_004684.1 + 39052 0.68 0.709275
Target:  5'- aUUGUGCGCCgggUGGCCAGCgUCaacacgaucaugaagGCCGg -3'
miRNA:   3'- cGACAUGUGGa--GCCGGUUGaAG---------------CGGU- -5'
18984 5' -54.3 NC_004684.1 + 47233 0.68 0.704988
Target:  5'- cCUGgGCACCggGGCCGcCUaCGCCAc -3'
miRNA:   3'- cGACaUGUGGagCCGGUuGAaGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.