miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 5' -54.3 NC_004684.1 + 63599 0.7 0.585024
Target:  5'- gGCggugGUuacCGCCUCGGacgccaUCAGCUUCGCCu -3'
miRNA:   3'- -CGa---CAu--GUGGAGCC------GGUUGAAGCGGu -5'
18984 5' -54.3 NC_004684.1 + 49542 0.7 0.585024
Target:  5'- cGgUGUGCGCggUGGCCGACUUCGg-- -3'
miRNA:   3'- -CgACAUGUGgaGCCGGUUGAAGCggu -5'
18984 5' -54.3 NC_004684.1 + 36305 0.7 0.585024
Target:  5'- cGCUGUcCACCcggUGGaCCAACaacUCGCCGg -3'
miRNA:   3'- -CGACAuGUGGa--GCC-GGUUGa--AGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 30149 0.7 0.585024
Target:  5'- -gUGUGCGCgUCGGCCAguggGCgaucaaCGCCGu -3'
miRNA:   3'- cgACAUGUGgAGCCGGU----UGaa----GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 36108 0.7 0.595919
Target:  5'- cGCgguggGUGCGCCUgcUGGCC---UUCGCCAc -3'
miRNA:   3'- -CGa----CAUGUGGA--GCCGGuugAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 11407 0.7 0.595919
Target:  5'- cGCcgacCACCUaccCGGCCGcccACUUCGCCAa -3'
miRNA:   3'- -CGacauGUGGA---GCCGGU---UGAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 62542 0.69 0.606845
Target:  5'- cGCUGgccaGCAgCUCGuCCAGCUUgGCCu -3'
miRNA:   3'- -CGACa---UGUgGAGCcGGUUGAAgCGGu -5'
18984 5' -54.3 NC_004684.1 + 64882 0.69 0.606845
Target:  5'- ----aGCACCaacggcgUGGUCAGCUUCGCCGa -3'
miRNA:   3'- cgacaUGUGGa------GCCGGUUGAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 64839 0.69 0.617792
Target:  5'- cCUG-GCACCagcUCGGCCAGCaggUCgGCCAc -3'
miRNA:   3'- cGACaUGUGG---AGCCGGUUGa--AG-CGGU- -5'
18984 5' -54.3 NC_004684.1 + 52967 0.69 0.617792
Target:  5'- cGUUG-ACcCCUUGGCCAGCagUUCGCgCAg -3'
miRNA:   3'- -CGACaUGuGGAGCCGGUUG--AAGCG-GU- -5'
18984 5' -54.3 NC_004684.1 + 6081 0.69 0.628752
Target:  5'- --gGUGCGCCUgagccaGGCCGggACUUCGCUc -3'
miRNA:   3'- cgaCAUGUGGAg-----CCGGU--UGAAGCGGu -5'
18984 5' -54.3 NC_004684.1 + 32907 0.69 0.628752
Target:  5'- cGCgGUugACCUCGGCgAcGCUgcacaGCCAu -3'
miRNA:   3'- -CGaCAugUGGAGCCGgU-UGAag---CGGU- -5'
18984 5' -54.3 NC_004684.1 + 27775 0.69 0.639715
Target:  5'- gGCUGUACACCcCGcCCGACggugCGCg- -3'
miRNA:   3'- -CGACAUGUGGaGCcGGUUGaa--GCGgu -5'
18984 5' -54.3 NC_004684.1 + 8414 0.69 0.650671
Target:  5'- cGCUGgcgcGCACCUCuuCCGGCgucagCGCCAa -3'
miRNA:   3'- -CGACa---UGUGGAGccGGUUGaa---GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 2537 0.69 0.660517
Target:  5'- aGCUGgcCGCCcaggcgggcgaugUCGGCCuug-UCGCCGg -3'
miRNA:   3'- -CGACauGUGG-------------AGCCGGuugaAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 54305 0.69 0.66161
Target:  5'- uGCUGgcCgACCUCGGCCccgAGCaggcCGCCGg -3'
miRNA:   3'- -CGACauG-UGGAGCCGG---UUGaa--GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 41166 0.69 0.66161
Target:  5'- aGgUGUACACCgaguuguccUCGGuCCAGCUgccuUCGUCGg -3'
miRNA:   3'- -CgACAUGUGG---------AGCC-GGUUGA----AGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 60347 0.68 0.683396
Target:  5'- ----cGCGCgUUCGGCCAGCggUGCCAg -3'
miRNA:   3'- cgacaUGUG-GAGCCGGUUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 18989 0.68 0.683396
Target:  5'- gGCg--GCaAUCUCGGCCAGC-UCGCgCAg -3'
miRNA:   3'- -CGacaUG-UGGAGCCGGUUGaAGCG-GU- -5'
18984 5' -54.3 NC_004684.1 + 36064 0.68 0.683396
Target:  5'- aCUGUGCGCCa-GGCCuGCguggagUCGCUg -3'
miRNA:   3'- cGACAUGUGGagCCGGuUGa-----AGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.