miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 5' -54.3 NC_004684.1 + 21090 0.67 0.767706
Target:  5'- aGCUauggGUGCGCCgcaggaUCgGGCCGACcugCGCCGc -3'
miRNA:   3'- -CGA----CAUGUGG------AG-CCGGUUGaa-GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 22992 0.72 0.459408
Target:  5'- cGCUGaucaACgGCCUgGGCCGACUggcCGCCGu -3'
miRNA:   3'- -CGACa---UG-UGGAgCCGGUUGAa--GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 23156 0.67 0.757533
Target:  5'- gGCgucgaACCggUUGGCCAGCUUgGCCAg -3'
miRNA:   3'- -CGacaugUGG--AGCCGGUUGAAgCGGU- -5'
18984 5' -54.3 NC_004684.1 + 23993 0.68 0.694222
Target:  5'- aGCcGU-CGCCa-GGCCAGCagUUCGCCGa -3'
miRNA:   3'- -CGaCAuGUGGagCCGGUUG--AAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 26075 0.66 0.786644
Target:  5'- ----aACACCUCGGCguaCGACUccagcggUCGCCu -3'
miRNA:   3'- cgacaUGUGGAGCCG---GUUGA-------AGCGGu -5'
18984 5' -54.3 NC_004684.1 + 26303 0.67 0.757533
Target:  5'- --gGUACGCagCUCGGCCAGgc-CGCCGg -3'
miRNA:   3'- cgaCAUGUG--GAGCCGGUUgaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 26529 0.66 0.81997
Target:  5'- cGCcGUACACCg-GGCCAccggcggcgaaccccGCUgccagcgCGCCGg -3'
miRNA:   3'- -CGaCAUGUGGagCCGGU---------------UGAa------GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 27775 0.69 0.639715
Target:  5'- gGCUGUACACCcCGcCCGACggugCGCg- -3'
miRNA:   3'- -CGACAUGUGGaGCcGGUUGaa--GCGgu -5'
18984 5' -54.3 NC_004684.1 + 28416 0.66 0.82907
Target:  5'- cGCcgGUugACCUggUGGUCGACUggcaugacauugugCGCCAg -3'
miRNA:   3'- -CGa-CAugUGGA--GCCGGUUGAa-------------GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 30149 0.7 0.585024
Target:  5'- -gUGUGCGCgUCGGCCAguggGCgaucaaCGCCGu -3'
miRNA:   3'- cgACAUGUGgAGCCGGU----UGaa----GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 32397 0.67 0.736818
Target:  5'- uGgUGUGCACCggcgucaGGCaCAGCgccgagCGCCAa -3'
miRNA:   3'- -CgACAUGUGGag-----CCG-GUUGaa----GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 32907 0.69 0.628752
Target:  5'- cGCgGUugACCUCGGCgAcGCUgcacaGCCAu -3'
miRNA:   3'- -CGaCAugUGGAGCCGgU-UGAag---CGGU- -5'
18984 5' -54.3 NC_004684.1 + 33208 0.76 0.280327
Target:  5'- uGCcGaGCACCUUGGCCAGCgcgagCGCCu -3'
miRNA:   3'- -CGaCaUGUGGAGCCGGUUGaa---GCGGu -5'
18984 5' -54.3 NC_004684.1 + 33337 0.78 0.205509
Target:  5'- cGCUGgcCACCUCGGugcaguCCGGCcUCGCCAu -3'
miRNA:   3'- -CGACauGUGGAGCC------GGUUGaAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 33676 0.66 0.79735
Target:  5'- cGCUGUGCACCaccacCGcGCUGGacacccUCGCCAg -3'
miRNA:   3'- -CGACAUGUGGa----GC-CGGUUga----AGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 34173 0.67 0.777741
Target:  5'- cGUUGUucGCGCCcgcCGcGCCAGggUCGCCGg -3'
miRNA:   3'- -CGACA--UGUGGa--GC-CGGUUgaAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 34538 0.66 0.816274
Target:  5'- aGCUGUAUgucgagGCCaUGGCCAGCUacgagagcgCGCUg -3'
miRNA:   3'- -CGACAUG------UGGaGCCGGUUGAa--------GCGGu -5'
18984 5' -54.3 NC_004684.1 + 34871 0.71 0.53129
Target:  5'- cGUUGUGCgcgacgugaagGCCUUGGCCAACgaCGgCAa -3'
miRNA:   3'- -CGACAUG-----------UGGAGCCGGUUGaaGCgGU- -5'
18984 5' -54.3 NC_004684.1 + 36064 0.68 0.683396
Target:  5'- aCUGUGCGCCa-GGCCuGCguggagUCGCUg -3'
miRNA:   3'- cGACAUGUGGagCCGGuUGa-----AGCGGu -5'
18984 5' -54.3 NC_004684.1 + 36108 0.7 0.595919
Target:  5'- cGCgguggGUGCGCCUgcUGGCC---UUCGCCAc -3'
miRNA:   3'- -CGa----CAUGUGGA--GCCGGuugAAGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.