miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 5' -54.3 NC_004684.1 + 2537 0.69 0.660517
Target:  5'- aGCUGgcCGCCcaggcgggcgaugUCGGCCuug-UCGCCGg -3'
miRNA:   3'- -CGACauGUGG-------------AGCCGGuugaAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 2892 0.68 0.683396
Target:  5'- aGCUucUugGCCUCGGCgAACUcgaacUCGCUg -3'
miRNA:   3'- -CGAc-AugUGGAGCCGgUUGA-----AGCGGu -5'
18984 5' -54.3 NC_004684.1 + 3514 0.72 0.439822
Target:  5'- cGCUG-ACugUggCGGCCAGCggUGCCAg -3'
miRNA:   3'- -CGACaUGugGa-GCCGGUUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 5936 0.7 0.574167
Target:  5'- cGCUGgcCACCgggCGGuCCAACcuggccgCGCCGg -3'
miRNA:   3'- -CGACauGUGGa--GCC-GGUUGaa-----GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 6081 0.69 0.628752
Target:  5'- --gGUGCGCCUgagccaGGCCGggACUUCGCUc -3'
miRNA:   3'- cgaCAUGUGGAg-----CCGGU--UGAAGCGGu -5'
18984 5' -54.3 NC_004684.1 + 6218 0.66 0.787626
Target:  5'- ----cGCgAUCUCGGCCAGCUgggCgGCCAg -3'
miRNA:   3'- cgacaUG-UGGAGCCGGUUGAa--G-CGGU- -5'
18984 5' -54.3 NC_004684.1 + 6490 1.11 0.001109
Target:  5'- aGCUGUACACCUCGGCCAACUUCGCCAa -3'
miRNA:   3'- -CGACAUGUGGAGCCGGUUGAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 6547 0.73 0.434039
Target:  5'- aGCUGgucaucauccccUGCGCCUCGGCCAagcgcgaaggcguucACgcCGCCGc -3'
miRNA:   3'- -CGAC------------AUGUGGAGCCGGU---------------UGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 6788 0.67 0.757533
Target:  5'- cGCcgGUGCACUggacgaCGGCCAcuACgaCGCCGu -3'
miRNA:   3'- -CGa-CAUGUGGa-----GCCGGU--UGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 8414 0.69 0.650671
Target:  5'- cGCUGgcgcGCACCUCuuCCGGCgucagCGCCAa -3'
miRNA:   3'- -CGACa---UGUGGAGccGGUUGaa---GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 10731 0.67 0.747233
Target:  5'- aCUGgGCAgcuccucguCCUCGGCCAGCa-CGCCc -3'
miRNA:   3'- cGACaUGU---------GGAGCCGGUUGaaGCGGu -5'
18984 5' -54.3 NC_004684.1 + 11407 0.7 0.595919
Target:  5'- cGCcgacCACCUaccCGGCCGcccACUUCGCCAa -3'
miRNA:   3'- -CGacauGUGGA---GCCGGU---UGAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 12121 0.66 0.806903
Target:  5'- uGCUGgucgaGCaugGCCUUGGCCAcCgcCGCCGc -3'
miRNA:   3'- -CGACa----UG---UGGAGCCGGUuGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 12917 0.92 0.02292
Target:  5'- uGCcgGUGCGCCgUCGGCCAACUUCGCCGc -3'
miRNA:   3'- -CGa-CAUGUGG-AGCCGGUUGAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 14384 0.66 0.796385
Target:  5'- cGCUGgugGCGCuggacgacgguuaCUCGGCCAgcgACUUCGaCGu -3'
miRNA:   3'- -CGACa--UGUG-------------GAGCCGGU---UGAAGCgGU- -5'
18984 5' -54.3 NC_004684.1 + 16115 0.67 0.777741
Target:  5'- aGCUGgACGCCUaCGccGCCAGCaUCGgCAu -3'
miRNA:   3'- -CGACaUGUGGA-GC--CGGUUGaAGCgGU- -5'
18984 5' -54.3 NC_004684.1 + 18989 0.68 0.683396
Target:  5'- gGCg--GCaAUCUCGGCCAGC-UCGCgCAg -3'
miRNA:   3'- -CGacaUG-UGGAGCCGGUUGaAGCG-GU- -5'
18984 5' -54.3 NC_004684.1 + 19459 0.72 0.489628
Target:  5'- aGCgGUgu-CCUCGGCCAugUUgCGCCGc -3'
miRNA:   3'- -CGaCAuguGGAGCCGGUugAA-GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 19682 0.67 0.761618
Target:  5'- ----aGCACCUCGGCCGccggACUgggcaggugcacgaCGCCAg -3'
miRNA:   3'- cgacaUGUGGAGCCGGU----UGAa-------------GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 19897 0.7 0.552604
Target:  5'- cGCUG-ACGaacuCCUUGGCCAGCaggccCGCCAu -3'
miRNA:   3'- -CGACaUGU----GGAGCCGGUUGaa---GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.