miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 5' -54.3 NC_004684.1 + 27775 0.69 0.639715
Target:  5'- gGCUGUACACCcCGcCCGACggugCGCg- -3'
miRNA:   3'- -CGACAUGUGGaGCcGGUUGaa--GCGgu -5'
18984 5' -54.3 NC_004684.1 + 30149 0.7 0.585024
Target:  5'- -gUGUGCGCgUCGGCCAguggGCgaucaaCGCCGu -3'
miRNA:   3'- cgACAUGUGgAGCCGGU----UGaa----GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 36305 0.7 0.585024
Target:  5'- cGCUGUcCACCcggUGGaCCAACaacUCGCCGg -3'
miRNA:   3'- -CGACAuGUGGa--GCC-GGUUGa--AGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 49542 0.7 0.585024
Target:  5'- cGgUGUGCGCggUGGCCGACUUCGg-- -3'
miRNA:   3'- -CgACAUGUGgaGCCGGUUGAAGCggu -5'
18984 5' -54.3 NC_004684.1 + 11407 0.7 0.595919
Target:  5'- cGCcgacCACCUaccCGGCCGcccACUUCGCCAa -3'
miRNA:   3'- -CGacauGUGGA---GCCGGU---UGAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 36108 0.7 0.595919
Target:  5'- cGCgguggGUGCGCCUgcUGGCC---UUCGCCAc -3'
miRNA:   3'- -CGa----CAUGUGGA--GCCGGuugAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 62542 0.69 0.606845
Target:  5'- cGCUGgccaGCAgCUCGuCCAGCUUgGCCu -3'
miRNA:   3'- -CGACa---UGUgGAGCcGGUUGAAgCGGu -5'
18984 5' -54.3 NC_004684.1 + 52967 0.69 0.617792
Target:  5'- cGUUG-ACcCCUUGGCCAGCagUUCGCgCAg -3'
miRNA:   3'- -CGACaUGuGGAGCCGGUUG--AAGCG-GU- -5'
18984 5' -54.3 NC_004684.1 + 32907 0.69 0.628752
Target:  5'- cGCgGUugACCUCGGCgAcGCUgcacaGCCAu -3'
miRNA:   3'- -CGaCAugUGGAGCCGgU-UGAag---CGGU- -5'
18984 5' -54.3 NC_004684.1 + 63599 0.7 0.585024
Target:  5'- gGCggugGUuacCGCCUCGGacgccaUCAGCUUCGCCu -3'
miRNA:   3'- -CGa---CAu--GUGGAGCC------GGUUGAAGCGGu -5'
18984 5' -54.3 NC_004684.1 + 5936 0.7 0.574167
Target:  5'- cGCUGgcCACCgggCGGuCCAACcuggccgCGCCGg -3'
miRNA:   3'- -CGACauGUGGa--GCC-GGUUGaa-----GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 63366 0.71 0.541912
Target:  5'- ----cGCACCgagCGGCCGACg-CGCCAg -3'
miRNA:   3'- cgacaUGUGGa--GCCGGUUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 65315 0.81 0.133077
Target:  5'- cGCUGUGCACCaCGGCCAg---CGCCAg -3'
miRNA:   3'- -CGACAUGUGGaGCCGGUugaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 33337 0.78 0.205509
Target:  5'- cGCUGgcCACCUCGGugcaguCCGGCcUCGCCAu -3'
miRNA:   3'- -CGACauGUGGAGCC------GGUUGaAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 60958 0.76 0.273342
Target:  5'- uGCUGUACACCUCguGGCUggUggCGUCGg -3'
miRNA:   3'- -CGACAUGUGGAG--CCGGuuGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 48553 0.73 0.39303
Target:  5'- cCUGccACACCUCGGCCuGCg-CGCCGa -3'
miRNA:   3'- cGACa-UGUGGAGCCGGuUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 22992 0.72 0.459408
Target:  5'- cGCUGaucaACgGCCUgGGCCGACUggcCGCCGu -3'
miRNA:   3'- -CGACa---UG-UGGAgCCGGUUGAa--GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 64232 0.71 0.499908
Target:  5'- gGC-GUugGCCUCGGCCAGg--CGCUg -3'
miRNA:   3'- -CGaCAugUGGAGCCGGUUgaaGCGGu -5'
18984 5' -54.3 NC_004684.1 + 34871 0.71 0.53129
Target:  5'- cGUUGUGCgcgacgugaagGCCUUGGCCAACgaCGgCAa -3'
miRNA:   3'- -CGACAUG-----------UGGAGCCGGUUGaaGCgGU- -5'
18984 5' -54.3 NC_004684.1 + 57563 0.71 0.541912
Target:  5'- aGCU--GCGCCggUUGGCCGACaUCGCCc -3'
miRNA:   3'- -CGAcaUGUGG--AGCCGGUUGaAGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.