miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 5' -54.3 NC_004684.1 + 6490 1.11 0.001109
Target:  5'- aGCUGUACACCUCGGCCAACUUCGCCAa -3'
miRNA:   3'- -CGACAUGUGGAGCCGGUUGAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 2892 0.68 0.683396
Target:  5'- aGCUucUugGCCUCGGCgAACUcgaacUCGCUg -3'
miRNA:   3'- -CGAc-AugUGGAGCCGgUUGA-----AGCGGu -5'
18984 5' -54.3 NC_004684.1 + 47233 0.68 0.704988
Target:  5'- cCUGgGCACCggGGCCGcCUaCGCCAc -3'
miRNA:   3'- cGACaUGUGGagCCGGUuGAaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 53098 0.66 0.825454
Target:  5'- gGCUGaccgACACCg-GGCCG---UCGCCGc -3'
miRNA:   3'- -CGACa---UGUGGagCCGGUugaAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 6547 0.73 0.434039
Target:  5'- aGCUGgucaucauccccUGCGCCUCGGCCAagcgcgaaggcguucACgcCGCCGc -3'
miRNA:   3'- -CGAC------------AUGUGGAGCCGGU---------------UGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 3514 0.72 0.439822
Target:  5'- cGCUG-ACugUggCGGCCAGCggUGCCAg -3'
miRNA:   3'- -CGACaUGugGa-GCCGGUUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 52324 0.7 0.552604
Target:  5'- cGCUGUgGCACCaCGGCCugauCgaCGCCGg -3'
miRNA:   3'- -CGACA-UGUGGaGCCGGuu--GaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 19897 0.7 0.552604
Target:  5'- cGCUG-ACGaacuCCUUGGCCAGCaggccCGCCAu -3'
miRNA:   3'- -CGACaUGU----GGAGCCGGUUGaa---GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 6081 0.69 0.628752
Target:  5'- --gGUGCGCCUgagccaGGCCGggACUUCGCUc -3'
miRNA:   3'- cgaCAUGUGGAg-----CCGGU--UGAAGCGGu -5'
18984 5' -54.3 NC_004684.1 + 36064 0.68 0.683396
Target:  5'- aCUGUGCGCCa-GGCCuGCguggagUCGCUg -3'
miRNA:   3'- cGACAUGUGGagCCGGuUGa-----AGCGGu -5'
18984 5' -54.3 NC_004684.1 + 2537 0.69 0.660517
Target:  5'- aGCUGgcCGCCcaggcgggcgaugUCGGCCuug-UCGCCGg -3'
miRNA:   3'- -CGACauGUGG-------------AGCCGGuugaAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 64839 0.69 0.617792
Target:  5'- cCUG-GCACCagcUCGGCCAGCaggUCgGCCAc -3'
miRNA:   3'- cGACaUGUGG---AGCCGGUUGa--AG-CGGU- -5'
18984 5' -54.3 NC_004684.1 + 41570 0.77 0.246795
Target:  5'- gGUUGUccauCACCUUGGCCAGCacCGCCGg -3'
miRNA:   3'- -CGACAu---GUGGAGCCGGUUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 54305 0.69 0.66161
Target:  5'- uGCUGgcCgACCUCGGCCccgAGCaggcCGCCGg -3'
miRNA:   3'- -CGACauG-UGGAGCCGG---UUGaa--GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 33208 0.76 0.280327
Target:  5'- uGCcGaGCACCUUGGCCAGCgcgagCGCCu -3'
miRNA:   3'- -CGaCaUGUGGAGCCGGUUGaa---GCGGu -5'
18984 5' -54.3 NC_004684.1 + 64882 0.69 0.606845
Target:  5'- ----aGCACCaacggcgUGGUCAGCUUCGCCGa -3'
miRNA:   3'- cgacaUGUGGa------GCCGGUUGAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 41166 0.69 0.66161
Target:  5'- aGgUGUACACCgaguuguccUCGGuCCAGCUgccuUCGUCGg -3'
miRNA:   3'- -CgACAUGUGG---------AGCC-GGUUGA----AGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 62294 0.68 0.694222
Target:  5'- cGCUgGUugGCCaggaCGGCaaCGugUUCGCCAu -3'
miRNA:   3'- -CGA-CAugUGGa---GCCG--GUugAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 57251 0.73 0.42072
Target:  5'- aGC-GUGCGCgUCGGCCAcCgcCGCCAu -3'
miRNA:   3'- -CGaCAUGUGgAGCCGGUuGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 19459 0.72 0.489628
Target:  5'- aGCgGUgu-CCUCGGCCAugUUgCGCCGc -3'
miRNA:   3'- -CGaCAuguGGAGCCGGUugAA-GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.