miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 5' -54.3 NC_004684.1 + 6490 1.11 0.001109
Target:  5'- aGCUGUACACCUCGGCCAACUUCGCCAa -3'
miRNA:   3'- -CGACAUGUGGAGCCGGUUGAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 12917 0.92 0.02292
Target:  5'- uGCcgGUGCGCCgUCGGCCAACUUCGCCGc -3'
miRNA:   3'- -CGa-CAUGUGG-AGCCGGUUGAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 65315 0.81 0.133077
Target:  5'- cGCUGUGCACCaCGGCCAg---CGCCAg -3'
miRNA:   3'- -CGACAUGUGGaGCCGGUugaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 33337 0.78 0.205509
Target:  5'- cGCUGgcCACCUCGGugcaguCCGGCcUCGCCAu -3'
miRNA:   3'- -CGACauGUGGAGCC------GGUUGaAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 41570 0.77 0.246795
Target:  5'- gGUUGUccauCACCUUGGCCAGCacCGCCGg -3'
miRNA:   3'- -CGACAu---GUGGAGCCGGUUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 60958 0.76 0.273342
Target:  5'- uGCUGUACACCUCguGGCUggUggCGUCGg -3'
miRNA:   3'- -CGACAUGUGGAG--CCGGuuGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 33208 0.76 0.280327
Target:  5'- uGCcGaGCACCUUGGCCAGCgcgagCGCCu -3'
miRNA:   3'- -CGaCaUGUGGAGCCGGUUGaa---GCGGu -5'
18984 5' -54.3 NC_004684.1 + 48553 0.73 0.39303
Target:  5'- cCUGccACACCUCGGCCuGCg-CGCCGa -3'
miRNA:   3'- cGACa-UGUGGAGCCGGuUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 57251 0.73 0.42072
Target:  5'- aGC-GUGCGCgUCGGCCAcCgcCGCCAu -3'
miRNA:   3'- -CGaCAUGUGgAGCCGGUuGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 6547 0.73 0.434039
Target:  5'- aGCUGgucaucauccccUGCGCCUCGGCCAagcgcgaaggcguucACgcCGCCGc -3'
miRNA:   3'- -CGAC------------AUGUGGAGCCGGU---------------UGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 3514 0.72 0.439822
Target:  5'- cGCUG-ACugUggCGGCCAGCggUGCCAg -3'
miRNA:   3'- -CGACaUGugGa-GCCGGUUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 22992 0.72 0.459408
Target:  5'- cGCUGaucaACgGCCUgGGCCGACUggcCGCCGu -3'
miRNA:   3'- -CGACa---UG-UGGAgCCGGUUGAa--GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 19459 0.72 0.489628
Target:  5'- aGCgGUgu-CCUCGGCCAugUUgCGCCGc -3'
miRNA:   3'- -CGaCAuguGGAGCCGGUugAA-GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 64232 0.71 0.499908
Target:  5'- gGC-GUugGCCUCGGCCAGg--CGCUg -3'
miRNA:   3'- -CGaCAugUGGAGCCGGUUgaaGCGGu -5'
18984 5' -54.3 NC_004684.1 + 34871 0.71 0.53129
Target:  5'- cGUUGUGCgcgacgugaagGCCUUGGCCAACgaCGgCAa -3'
miRNA:   3'- -CGACAUG-----------UGGAGCCGGUUGaaGCgGU- -5'
18984 5' -54.3 NC_004684.1 + 63366 0.71 0.541912
Target:  5'- ----cGCACCgagCGGCCGACg-CGCCAg -3'
miRNA:   3'- cgacaUGUGGa--GCCGGUUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 57563 0.71 0.541912
Target:  5'- aGCU--GCGCCggUUGGCCGACaUCGCCc -3'
miRNA:   3'- -CGAcaUGUGG--AGCCGGUUGaAGCGGu -5'
18984 5' -54.3 NC_004684.1 + 52324 0.7 0.552604
Target:  5'- cGCUGUgGCACCaCGGCCugauCgaCGCCGg -3'
miRNA:   3'- -CGACA-UGUGGaGCCGGuu--GaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 19897 0.7 0.552604
Target:  5'- cGCUG-ACGaacuCCUUGGCCAGCaggccCGCCAu -3'
miRNA:   3'- -CGACaUGU----GGAGCCGGUUGaa---GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 5936 0.7 0.574167
Target:  5'- cGCUGgcCACCgggCGGuCCAACcuggccgCGCCGg -3'
miRNA:   3'- -CGACauGUGGa--GCC-GGUUGaa-----GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.