miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18984 5' -54.3 NC_004684.1 + 67174 0.66 0.787626
Target:  5'- cGCUGgcCGCCgaGGCCAACgccCGCa- -3'
miRNA:   3'- -CGACauGUGGagCCGGUUGaa-GCGgu -5'
18984 5' -54.3 NC_004684.1 + 67085 0.67 0.736818
Target:  5'- gGC-GUugGCCUcggCGGCCAGCgaacucuugUGCCAg -3'
miRNA:   3'- -CGaCAugUGGA---GCCGGUUGaa-------GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 66557 0.67 0.747233
Target:  5'- cGUUGUGCGCCUCa-CCGGaauugCGCCAc -3'
miRNA:   3'- -CGACAUGUGGAGccGGUUgaa--GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 65315 0.81 0.133077
Target:  5'- cGCUGUGCACCaCGGCCAg---CGCCAg -3'
miRNA:   3'- -CGACAUGUGGaGCCGGUugaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 64882 0.69 0.606845
Target:  5'- ----aGCACCaacggcgUGGUCAGCUUCGCCGa -3'
miRNA:   3'- cgacaUGUGGa------GCCGGUUGAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 64839 0.69 0.617792
Target:  5'- cCUG-GCACCagcUCGGCCAGCaggUCgGCCAc -3'
miRNA:   3'- cGACaUGUGG---AGCCGGUUGa--AG-CGGU- -5'
18984 5' -54.3 NC_004684.1 + 64232 0.71 0.499908
Target:  5'- gGC-GUugGCCUCGGCCAGg--CGCUg -3'
miRNA:   3'- -CGaCAugUGGAGCCGGUUgaaGCGGu -5'
18984 5' -54.3 NC_004684.1 + 63599 0.7 0.585024
Target:  5'- gGCggugGUuacCGCCUCGGacgccaUCAGCUUCGCCu -3'
miRNA:   3'- -CGa---CAu--GUGGAGCC------GGUUGAAGCGGu -5'
18984 5' -54.3 NC_004684.1 + 63366 0.71 0.541912
Target:  5'- ----cGCACCgagCGGCCGACg-CGCCAg -3'
miRNA:   3'- cgacaUGUGGa--GCCGGUUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 62542 0.69 0.606845
Target:  5'- cGCUGgccaGCAgCUCGuCCAGCUUgGCCu -3'
miRNA:   3'- -CGACa---UGUgGAGCcGGUUGAAgCGGu -5'
18984 5' -54.3 NC_004684.1 + 62294 0.68 0.694222
Target:  5'- cGCUgGUugGCCaggaCGGCaaCGugUUCGCCAu -3'
miRNA:   3'- -CGA-CAugUGGa---GCCG--GUugAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 62204 0.66 0.787626
Target:  5'- --aGUuCACCgacGCCAugUUCGCCAg -3'
miRNA:   3'- cgaCAuGUGGagcCGGUugAAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 61642 0.66 0.79735
Target:  5'- uGCUGccGCACC-CGGaCCAACcagcggcaCGCCAg -3'
miRNA:   3'- -CGACa-UGUGGaGCC-GGUUGaa------GCGGU- -5'
18984 5' -54.3 NC_004684.1 + 61584 0.66 0.806903
Target:  5'- aGCUGggACGCCUCGGUggucgaGGCguccCGCCc -3'
miRNA:   3'- -CGACa-UGUGGAGCCGg-----UUGaa--GCGGu -5'
18984 5' -54.3 NC_004684.1 + 61280 0.66 0.816274
Target:  5'- aGgUGUACGCCgaGGCCAccaACccCGCCGa -3'
miRNA:   3'- -CgACAUGUGGagCCGGU---UGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 60958 0.76 0.273342
Target:  5'- uGCUGUACACCUCguGGCUggUggCGUCGg -3'
miRNA:   3'- -CGACAUGUGGAG--CCGGuuGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 60957 0.67 0.726297
Target:  5'- --gGUGCGCaucgcgcuccCGGCCGACaUCGCCGc -3'
miRNA:   3'- cgaCAUGUGga--------GCCGGUUGaAGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 60926 0.66 0.79735
Target:  5'- gGCgucGcACGCCUCGGCCAG-UUCGaCAu -3'
miRNA:   3'- -CGa--CaUGUGGAGCCGGUUgAAGCgGU- -5'
18984 5' -54.3 NC_004684.1 + 60447 0.67 0.757533
Target:  5'- cGCcggGUuCgACCUCGGCCAGCa-UGCCGg -3'
miRNA:   3'- -CGa--CAuG-UGGAGCCGGUUGaaGCGGU- -5'
18984 5' -54.3 NC_004684.1 + 60347 0.68 0.683396
Target:  5'- ----cGCGCgUUCGGCCAGCggUGCCAg -3'
miRNA:   3'- cgacaUGUG-GAGCCGGUUGaaGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.