miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 3' -56.9 NC_004684.1 + 5837 0.67 0.655114
Target:  5'- aGCU-GGcgGUGUUCgaggaCCA-GGCGUGCg -3'
miRNA:   3'- -CGAgCCuaCGCAAGa----GGUgCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 49715 0.67 0.655114
Target:  5'- cGCUCGGcggcgcgGCGUUCaaacUCaGCGGCaCGCu -3'
miRNA:   3'- -CGAGCCua-----CGCAAG----AGgUGCCGcGCG- -5'
18985 3' -56.9 NC_004684.1 + 37796 0.67 0.644485
Target:  5'- gGCgaaggCGGugaGUGUGUggggCACGGCGCGCc -3'
miRNA:   3'- -CGa----GCC---UACGCAagagGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 30201 0.67 0.644485
Target:  5'- aGCUCGcGcagGCGUUgCUCCACacuGCGgGCc -3'
miRNA:   3'- -CGAGC-Cua-CGCAA-GAGGUGc--CGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 34576 0.67 0.633845
Target:  5'- uUUCGGggGUGUcCUCgGCGGUGC-Cg -3'
miRNA:   3'- cGAGCCuaCGCAaGAGgUGCCGCGcG- -5'
18985 3' -56.9 NC_004684.1 + 24521 0.67 0.623204
Target:  5'- cGUUCGGcgGUGccaUCUaCgGCGGUGUGCc -3'
miRNA:   3'- -CGAGCCuaCGCa--AGA-GgUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 40469 0.67 0.623204
Target:  5'- uGCUCGGGgg---UCUCgGCGGUcuGCGCc -3'
miRNA:   3'- -CGAGCCUacgcaAGAGgUGCCG--CGCG- -5'
18985 3' -56.9 NC_004684.1 + 57632 0.68 0.61257
Target:  5'- aGCUCGGcgGuCGcgCUCUggaGGCGgGCc -3'
miRNA:   3'- -CGAGCCuaC-GCaaGAGGug-CCGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 57181 0.68 0.61257
Target:  5'- cGCUCGGGcgcagGCGggCcuggaaggCgGCGGCGCGa -3'
miRNA:   3'- -CGAGCCUa----CGCaaGa-------GgUGCCGCGCg -5'
18985 3' -56.9 NC_004684.1 + 26551 0.68 0.61257
Target:  5'- gGC-CGGGguguacGCGUUCcggcgcgCCcUGGCGCGCg -3'
miRNA:   3'- -CGaGCCUa-----CGCAAGa------GGuGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 56970 0.68 0.61257
Target:  5'- cCUCGccaaGGUGCGggugCCAgGGUGCGCu -3'
miRNA:   3'- cGAGC----CUACGCaagaGGUgCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 19540 0.68 0.592416
Target:  5'- aGCUgCGGGUGCGccgggcggugccaggUCUCCGggccUGGCGuCGUg -3'
miRNA:   3'- -CGA-GCCUACGCa--------------AGAGGU----GCCGC-GCG- -5'
18985 3' -56.9 NC_004684.1 + 37258 0.68 0.591358
Target:  5'- uGCUCGGcgcGaCGUggcCCuCGGCGCGCu -3'
miRNA:   3'- -CGAGCCua-C-GCAagaGGuGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 2646 0.68 0.589243
Target:  5'- cCUCGGcgaaggccuccGCGcgCUCCACgcaGGUGCGCa -3'
miRNA:   3'- cGAGCCua---------CGCaaGAGGUG---CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 56409 0.68 0.5598
Target:  5'- aCUCGcGcagcGCGgUCUCCAcguccCGGCGCGCc -3'
miRNA:   3'- cGAGC-Cua--CGCaAGAGGU-----GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 20680 0.69 0.540052
Target:  5'- cGCUCGGcgugaGCGUgccuucgacggugacCUCCACGGUGCc- -3'
miRNA:   3'- -CGAGCCua---CGCAa--------------GAGGUGCCGCGcg -5'
18985 3' -56.9 NC_004684.1 + 10558 0.69 0.532835
Target:  5'- gGCggGGAggcccugGCGUUCcCCGCcgauccggcugguucGGCGCGCg -3'
miRNA:   3'- -CGagCCUa------CGCAAGaGGUG---------------CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 19985 0.69 0.521566
Target:  5'- aGCUUGGuggcgucgaacacGUGCGUgacgccCUggcgcguugucugcaCCACGGUGCGCg -3'
miRNA:   3'- -CGAGCC-------------UACGCAa-----GA---------------GGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 7336 0.69 0.518508
Target:  5'- uGCUCGG-UGUGcaacCCGcCGGUGCGCg -3'
miRNA:   3'- -CGAGCCuACGCaagaGGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 10125 0.69 0.518508
Target:  5'- cGCguggCGauGAUGCG--CUCCcgguCGGCGCGCg -3'
miRNA:   3'- -CGa---GC--CUACGCaaGAGGu---GCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.