miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 3' -56.9 NC_004684.1 + 20680 0.69 0.540052
Target:  5'- cGCUCGGcgugaGCGUgccuucgacggugacCUCCACGGUGCc- -3'
miRNA:   3'- -CGAGCCua---CGCAa--------------GAGGUGCCGCGcg -5'
18985 3' -56.9 NC_004684.1 + 21655 0.66 0.718133
Target:  5'- cGCUCucg-GCGUUCUCCAucuCGGUGuCGa -3'
miRNA:   3'- -CGAGccuaCGCAAGAGGU---GCCGC-GCg -5'
18985 3' -56.9 NC_004684.1 + 23687 0.71 0.421475
Target:  5'- gGCcCGGAccagaGCGUggcCUCCaaccugggcgGCGGCGCGCu -3'
miRNA:   3'- -CGaGCCUa----CGCAa--GAGG----------UGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 23751 0.72 0.385824
Target:  5'- uGCUCGG-UGCGcagUUCgggCCGUGGgGCGCg -3'
miRNA:   3'- -CGAGCCuACGC---AAGa--GGUGCCgCGCG- -5'
18985 3' -56.9 NC_004684.1 + 24521 0.67 0.623204
Target:  5'- cGUUCGGcgGUGccaUCUaCgGCGGUGUGCc -3'
miRNA:   3'- -CGAGCCuaCGCa--AGA-GgUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 26387 0.71 0.394548
Target:  5'- -gUCGGcgGCGaUCUggccaacgccgCCAcCGGCGCGCu -3'
miRNA:   3'- cgAGCCuaCGCaAGA-----------GGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 26551 0.68 0.61257
Target:  5'- gGC-CGGGguguacGCGUUCcggcgcgCCcUGGCGCGCg -3'
miRNA:   3'- -CGaGCCUa-----CGCAAGa------GGuGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 27169 0.66 0.728417
Target:  5'- aGCUaCGGcgGCGacCUggCCACGGCGaucuuugGCg -3'
miRNA:   3'- -CGA-GCCuaCGCaaGA--GGUGCCGCg------CG- -5'
18985 3' -56.9 NC_004684.1 + 27844 0.66 0.675247
Target:  5'- aGCcCGGGcgacaccUGCGUcaUCgACGGCGCGa -3'
miRNA:   3'- -CGaGCCU-------ACGCAagAGgUGCCGCGCg -5'
18985 3' -56.9 NC_004684.1 + 28986 0.73 0.336216
Target:  5'- -aUCaGcgGCGgUCgCCACGGCGCGCc -3'
miRNA:   3'- cgAGcCuaCGCaAGaGGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 30201 0.67 0.644485
Target:  5'- aGCUCGcGcagGCGUUgCUCCACacuGCGgGCc -3'
miRNA:   3'- -CGAGC-Cua-CGCAA-GAGGUGc--CGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 31930 0.7 0.468708
Target:  5'- cGgUCGGGgcuCGUUCUCCGUGGC-CGCa -3'
miRNA:   3'- -CgAGCCUac-GCAAGAGGUGCCGcGCG- -5'
18985 3' -56.9 NC_004684.1 + 34576 0.67 0.633845
Target:  5'- uUUCGGggGUGUcCUCgGCGGUGC-Cg -3'
miRNA:   3'- cGAGCCuaCGCAaGAGgUGCCGCGcG- -5'
18985 3' -56.9 NC_004684.1 + 35407 0.66 0.682633
Target:  5'- uGCUUGGGcgaguucuuguucGCGUUgucgCUCCACGGCG-GUg -3'
miRNA:   3'- -CGAGCCUa------------CGCAA----GAGGUGCCGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 37258 0.68 0.591358
Target:  5'- uGCUCGGcgcGaCGUggcCCuCGGCGCGCu -3'
miRNA:   3'- -CGAGCCua-C-GCAagaGGuGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 37796 0.67 0.644485
Target:  5'- gGCgaaggCGGugaGUGUGUggggCACGGCGCGCc -3'
miRNA:   3'- -CGa----GCC---UACGCAagagGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 39037 0.67 0.665723
Target:  5'- gGCUCGGcgGUG---UCCAUuGUGCGCc -3'
miRNA:   3'- -CGAGCCuaCGCaagAGGUGcCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 40469 0.67 0.623204
Target:  5'- uGCUCGGGgg---UCUCgGCGGUcuGCGCc -3'
miRNA:   3'- -CGAGCCUacgcaAGAGgUGCCG--CGCG- -5'
18985 3' -56.9 NC_004684.1 + 43778 0.67 0.655114
Target:  5'- gGC-CGGGUacgucgugcuugGCGUUCUUacgguggUGGCGCGCg -3'
miRNA:   3'- -CGaGCCUA------------CGCAAGAGgu-----GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 44647 0.66 0.728417
Target:  5'- aCUCGGcccacUGCGUcacccgCUgCUGCGGCgGCGCg -3'
miRNA:   3'- cGAGCCu----ACGCAa-----GA-GGUGCCG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.