miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 3' -56.9 NC_004684.1 + 2646 0.68 0.589243
Target:  5'- cCUCGGcgaaggccuccGCGcgCUCCACgcaGGUGCGCa -3'
miRNA:   3'- cGAGCCua---------CGCaaGAGGUG---CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 3176 0.66 0.72944
Target:  5'- aGCUCGGAaaccgggagcacggaGCGggggUCgaUCAuCGGCGCGCc -3'
miRNA:   3'- -CGAGCCUa--------------CGCa---AGa-GGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 4784 0.73 0.320747
Target:  5'- gGCUCcgGGGUGCGcgacgCCAugacCGGCGCGCa -3'
miRNA:   3'- -CGAG--CCUACGCaaga-GGU----GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 5837 0.67 0.655114
Target:  5'- aGCU-GGcgGUGUUCgaggaCCA-GGCGUGCg -3'
miRNA:   3'- -CGAgCCuaCGCAAGa----GGUgCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 7336 0.69 0.518508
Target:  5'- uGCUCGG-UGUGcaacCCGcCGGUGCGCg -3'
miRNA:   3'- -CGAGCCuACGCaagaGGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 7452 1.14 0.000444
Target:  5'- aGCUCGGAUGCGUUCUCCACGGCGCGCa -3'
miRNA:   3'- -CGAGCCUACGCAAGAGGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 8145 0.67 0.665723
Target:  5'- uGCUCGGGUGCagcagaucGUcaaccagaUCgCCgGgGGCGCGCu -3'
miRNA:   3'- -CGAGCCUACG--------CA--------AGaGG-UgCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 8436 0.66 0.676303
Target:  5'- aGCUC-GAUGauuGUUUUCUucucGCuGGCGCGCa -3'
miRNA:   3'- -CGAGcCUACg--CAAGAGG----UG-CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 9731 0.72 0.376374
Target:  5'- cGCcCGGAUGCcgggaauguucauGUUCagcgccUgCACGGCGCGCu -3'
miRNA:   3'- -CGaGCCUACG-------------CAAG------AgGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 10125 0.69 0.518508
Target:  5'- cGCguggCGauGAUGCG--CUCCcgguCGGCGCGCg -3'
miRNA:   3'- -CGa---GC--CUACGCaaGAGGu---GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 10215 0.67 0.665723
Target:  5'- aGgUCaGcgGCGUUCUCCAgGuccaCGCGCu -3'
miRNA:   3'- -CgAGcCuaCGCAAGAGGUgCc---GCGCG- -5'
18985 3' -56.9 NC_004684.1 + 10558 0.69 0.532835
Target:  5'- gGCggGGAggcccugGCGUUCcCCGCcgauccggcugguucGGCGCGCg -3'
miRNA:   3'- -CGagCCUa------CGCAAGaGGUG---------------CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 11692 0.66 0.69629
Target:  5'- aGCUCGG-UGcCGUcgUCCAggcgcacCGGCGgGCu -3'
miRNA:   3'- -CGAGCCuAC-GCAagAGGU-------GCCGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 11907 0.66 0.686844
Target:  5'- cGC-CGGAcagcgGCGcgcucgcgcccUUCUCCACGGUG-GCc -3'
miRNA:   3'- -CGaGCCUa----CGC-----------AAGAGGUGCCGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 12964 0.66 0.707769
Target:  5'- gGCUCcccGGcgGCGgcCUCgGCGGUG-GCg -3'
miRNA:   3'- -CGAG---CCuaCGCaaGAGgUGCCGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 14922 0.77 0.189962
Target:  5'- -aUCGGggGCGacgCaCCACGGCGCGCc -3'
miRNA:   3'- cgAGCCuaCGCaa-GaGGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 17279 0.66 0.707769
Target:  5'- uGCUCGGcgGCGcugguuUUCUggCCGgGGuCGCGg -3'
miRNA:   3'- -CGAGCCuaCGC------AAGA--GGUgCC-GCGCg -5'
18985 3' -56.9 NC_004684.1 + 18526 0.7 0.459039
Target:  5'- uGCUCGGGaGCcacgUCggCCGcCGGUGCGCc -3'
miRNA:   3'- -CGAGCCUaCGca--AGa-GGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 19540 0.68 0.592416
Target:  5'- aGCUgCGGGUGCGccgggcggugccaggUCUCCGggccUGGCGuCGUg -3'
miRNA:   3'- -CGA-GCCUACGCa--------------AGAGGU----GCCGC-GCG- -5'
18985 3' -56.9 NC_004684.1 + 19985 0.69 0.521566
Target:  5'- aGCUUGGuggcgucgaacacGUGCGUgacgccCUggcgcguugucugcaCCACGGUGCGCg -3'
miRNA:   3'- -CGAGCC-------------UACGCAa-----GA---------------GGUGCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.