miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 3' -56.9 NC_004684.1 + 66348 0.67 0.655114
Target:  5'- cGC-CGGG-GCGggCggCCAgGGCGaCGCg -3'
miRNA:   3'- -CGaGCCUaCGCaaGa-GGUgCCGC-GCG- -5'
18985 3' -56.9 NC_004684.1 + 65874 0.71 0.440029
Target:  5'- gGCaUCGGucgccGUGCGcgCgcCCAcCGGCGCGCg -3'
miRNA:   3'- -CG-AGCC-----UACGCaaGa-GGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 65864 0.71 0.39367
Target:  5'- aGCgCGGGUcGCGUcgUCgCCguugagcGCGGCGCGCa -3'
miRNA:   3'- -CGaGCCUA-CGCA--AGaGG-------UGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 65754 0.66 0.728417
Target:  5'- cCUCGcGG-GCGUUggCCGCcGCGCGCc -3'
miRNA:   3'- cGAGC-CUaCGCAAgaGGUGcCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 63997 0.7 0.478479
Target:  5'- cCUUGGcgGCGgUCUCCA-GGCGCu- -3'
miRNA:   3'- cGAGCCuaCGCaAGAGGUgCCGCGcg -5'
18985 3' -56.9 NC_004684.1 + 63274 0.73 0.313215
Target:  5'- cGUUCGGccGCGUcgagUCgaCC-CGGCGCGCa -3'
miRNA:   3'- -CGAGCCuaCGCA----AGa-GGuGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 61922 0.66 0.728417
Target:  5'- cGCg-GGGUGCGgg--CCACGGCaccCGCc -3'
miRNA:   3'- -CGagCCUACGCaagaGGUGCCGc--GCG- -5'
18985 3' -56.9 NC_004684.1 + 60319 0.66 0.686844
Target:  5'- cCUCGGcaAUGCGUUCgagcgcgaUCACcGCGCGUu -3'
miRNA:   3'- cGAGCC--UACGCAAGa-------GGUGcCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 58180 0.7 0.474558
Target:  5'- uGCUCGGc-GCGcucccggucgagCUgCACGGUGCGCa -3'
miRNA:   3'- -CGAGCCuaCGCaa----------GAgGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 57632 0.68 0.61257
Target:  5'- aGCUCGGcgGuCGcgCUCUggaGGCGgGCc -3'
miRNA:   3'- -CGAGCCuaC-GCaaGAGGug-CCGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 57181 0.68 0.61257
Target:  5'- cGCUCGGGcgcagGCGggCcuggaaggCgGCGGCGCGa -3'
miRNA:   3'- -CGAGCCUa----CGCaaGa-------GgUGCCGCGCg -5'
18985 3' -56.9 NC_004684.1 + 56970 0.68 0.61257
Target:  5'- cCUCGccaaGGUGCGggugCCAgGGUGCGCu -3'
miRNA:   3'- cGAGC----CUACGCaagaGGUgCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 56409 0.68 0.5598
Target:  5'- aCUCGcGcagcGCGgUCUCCAcguccCGGCGCGCc -3'
miRNA:   3'- cGAGC-Cua--CGCaAGAGGU-----GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 55269 0.72 0.344152
Target:  5'- cGCcagCGG-UGCGUUCUCCGgGG-GUGCu -3'
miRNA:   3'- -CGa--GCCuACGCAAGAGGUgCCgCGCG- -5'
18985 3' -56.9 NC_004684.1 + 53806 0.7 0.468708
Target:  5'- -aUCGGGuUGCGc-CUCCAUgcgGGCGUGCg -3'
miRNA:   3'- cgAGCCU-ACGCaaGAGGUG---CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 50361 0.81 0.105495
Target:  5'- gGCaUCGGcgGCGUUCUUCAcccgcuCGGUGCGCa -3'
miRNA:   3'- -CG-AGCCuaCGCAAGAGGU------GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 49715 0.67 0.655114
Target:  5'- cGCUCGGcggcgcgGCGUUCaaacUCaGCGGCaCGCu -3'
miRNA:   3'- -CGAGCCua-----CGCAAG----AGgUGCCGcGCG- -5'
18985 3' -56.9 NC_004684.1 + 46798 0.67 0.665723
Target:  5'- -gUCGGugGCGcgCUCgCACagGGCGCGCc -3'
miRNA:   3'- cgAGCCuaCGCaaGAG-GUG--CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 44647 0.66 0.728417
Target:  5'- aCUCGGcccacUGCGUcacccgCUgCUGCGGCgGCGCg -3'
miRNA:   3'- cGAGCCu----ACGCAa-----GA-GGUGCCG-CGCG- -5'
18985 3' -56.9 NC_004684.1 + 43778 0.67 0.655114
Target:  5'- gGC-CGGGUacgucgugcuugGCGUUCUUacgguggUGGCGCGCg -3'
miRNA:   3'- -CGaGCCUA------------CGCAAGAGgu-----GCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.