miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 3' -56.9 NC_004684.1 + 49715 0.67 0.655114
Target:  5'- cGCUCGGcggcgcgGCGUUCaaacUCaGCGGCaCGCu -3'
miRNA:   3'- -CGAGCCua-----CGCAAG----AGgUGCCGcGCG- -5'
18985 3' -56.9 NC_004684.1 + 57181 0.68 0.61257
Target:  5'- cGCUCGGGcgcagGCGggCcuggaaggCgGCGGCGCGa -3'
miRNA:   3'- -CGAGCCUa----CGCaaGa-------GgUGCCGCGCg -5'
18985 3' -56.9 NC_004684.1 + 26551 0.68 0.61257
Target:  5'- gGC-CGGGguguacGCGUUCcggcgcgCCcUGGCGCGCg -3'
miRNA:   3'- -CGaGCCUa-----CGCAAGa------GGuGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 24521 0.67 0.623204
Target:  5'- cGUUCGGcgGUGccaUCUaCgGCGGUGUGCc -3'
miRNA:   3'- -CGAGCCuaCGCa--AGA-GgUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 40469 0.67 0.623204
Target:  5'- uGCUCGGGgg---UCUCgGCGGUcuGCGCc -3'
miRNA:   3'- -CGAGCCUacgcaAGAGgUGCCG--CGCG- -5'
18985 3' -56.9 NC_004684.1 + 37796 0.67 0.644485
Target:  5'- gGCgaaggCGGugaGUGUGUggggCACGGCGCGCc -3'
miRNA:   3'- -CGa----GCC---UACGCAagagGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 5837 0.67 0.655114
Target:  5'- aGCU-GGcgGUGUUCgaggaCCA-GGCGUGCg -3'
miRNA:   3'- -CGAgCCuaCGCAAGa----GGUgCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 66348 0.67 0.655114
Target:  5'- cGC-CGGG-GCGggCggCCAgGGCGaCGCg -3'
miRNA:   3'- -CGaGCCUaCGCaaGa-GGUgCCGC-GCG- -5'
18985 3' -56.9 NC_004684.1 + 43778 0.67 0.655114
Target:  5'- gGC-CGGGUacgucgugcuugGCGUUCUUacgguggUGGCGCGCg -3'
miRNA:   3'- -CGaGCCUA------------CGCAAGAGgu-----GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 19540 0.68 0.592416
Target:  5'- aGCUgCGGGUGCGccgggcggugccaggUCUCCGggccUGGCGuCGUg -3'
miRNA:   3'- -CGA-GCCUACGCa--------------AGAGGU----GCCGC-GCG- -5'
18985 3' -56.9 NC_004684.1 + 10558 0.69 0.532835
Target:  5'- gGCggGGAggcccugGCGUUCcCCGCcgauccggcugguucGGCGCGCg -3'
miRNA:   3'- -CGagCCUa------CGCAAGaGGUG---------------CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 7336 0.69 0.518508
Target:  5'- uGCUCGG-UGUGcaacCCGcCGGUGCGCg -3'
miRNA:   3'- -CGAGCCuACGCaagaGGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 4784 0.73 0.320747
Target:  5'- gGCUCcgGGGUGCGcgacgCCAugacCGGCGCGCa -3'
miRNA:   3'- -CGAG--CCUACGCaaga-GGU----GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 23751 0.72 0.385824
Target:  5'- uGCUCGG-UGCGcagUUCgggCCGUGGgGCGCg -3'
miRNA:   3'- -CGAGCCuACGC---AAGa--GGUGCCgCGCG- -5'
18985 3' -56.9 NC_004684.1 + 65864 0.71 0.39367
Target:  5'- aGCgCGGGUcGCGUcgUCgCCguugagcGCGGCGCGCa -3'
miRNA:   3'- -CGaGCCUA-CGCA--AGaGG-------UGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 26387 0.71 0.394548
Target:  5'- -gUCGGcgGCGaUCUggccaacgccgCCAcCGGCGCGCu -3'
miRNA:   3'- cgAGCCuaCGCaAGA-----------GGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 23687 0.71 0.421475
Target:  5'- gGCcCGGAccagaGCGUggcCUCCaaccugggcgGCGGCGCGCu -3'
miRNA:   3'- -CGaGCCUa----CGCAa--GAGG----------UGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 53806 0.7 0.468708
Target:  5'- -aUCGGGuUGCGc-CUCCAUgcgGGCGUGCg -3'
miRNA:   3'- cgAGCCU-ACGCaaGAGGUG---CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 31930 0.7 0.468708
Target:  5'- cGgUCGGGgcuCGUUCUCCGUGGC-CGCa -3'
miRNA:   3'- -CgAGCCUac-GCAAGAGGUGCCGcGCG- -5'
18985 3' -56.9 NC_004684.1 + 63997 0.7 0.478479
Target:  5'- cCUUGGcgGCGgUCUCCA-GGCGCu- -3'
miRNA:   3'- cGAGCCuaCGCaAGAGGUgCCGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.