miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 3' -56.9 NC_004684.1 + 7452 1.14 0.000444
Target:  5'- aGCUCGGAUGCGUUCUCCACGGCGCGCa -3'
miRNA:   3'- -CGAGCCUACGCAAGAGGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 34576 0.67 0.633845
Target:  5'- uUUCGGggGUGUcCUCgGCGGUGC-Cg -3'
miRNA:   3'- cGAGCCuaCGCAaGAGgUGCCGCGcG- -5'
18985 3' -56.9 NC_004684.1 + 46798 0.67 0.665723
Target:  5'- -gUCGGugGCGcgCUCgCACagGGCGCGCc -3'
miRNA:   3'- cgAGCCuaCGCaaGAG-GUG--CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 3176 0.66 0.72944
Target:  5'- aGCUCGGAaaccgggagcacggaGCGggggUCgaUCAuCGGCGCGCc -3'
miRNA:   3'- -CGAGCCUa--------------CGCa---AGa-GGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 55269 0.72 0.344152
Target:  5'- cGCcagCGG-UGCGUUCUCCGgGG-GUGCu -3'
miRNA:   3'- -CGa--GCCuACGCAAGAGGUgCCgCGCG- -5'
18985 3' -56.9 NC_004684.1 + 9731 0.72 0.376374
Target:  5'- cGCcCGGAUGCcgggaauguucauGUUCagcgccUgCACGGCGCGCu -3'
miRNA:   3'- -CGaGCCUACG-------------CAAG------AgGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 18526 0.7 0.459039
Target:  5'- uGCUCGGGaGCcacgUCggCCGcCGGUGCGCc -3'
miRNA:   3'- -CGAGCCUaCGca--AGa-GGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 58180 0.7 0.474558
Target:  5'- uGCUCGGc-GCGcucccggucgagCUgCACGGUGCGCa -3'
miRNA:   3'- -CGAGCCuaCGCaa----------GAgGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 20680 0.69 0.540052
Target:  5'- cGCUCGGcgugaGCGUgccuucgacggugacCUCCACGGUGCc- -3'
miRNA:   3'- -CGAGCCua---CGCAa--------------GAGGUGCCGCGcg -5'
18985 3' -56.9 NC_004684.1 + 56970 0.68 0.61257
Target:  5'- cCUCGccaaGGUGCGggugCCAgGGUGCGCu -3'
miRNA:   3'- cGAGC----CUACGCaagaGGUgCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 2646 0.68 0.589243
Target:  5'- cCUCGGcgaaggccuccGCGcgCUCCACgcaGGUGCGCa -3'
miRNA:   3'- cGAGCCua---------CGCaaGAGGUG---CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 19985 0.69 0.521566
Target:  5'- aGCUUGGuggcgucgaacacGUGCGUgacgccCUggcgcguugucugcaCCACGGUGCGCg -3'
miRNA:   3'- -CGAGCC-------------UACGCAa-----GA---------------GGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 14922 0.77 0.189962
Target:  5'- -aUCGGggGCGacgCaCCACGGCGCGCc -3'
miRNA:   3'- cgAGCCuaCGCaa-GaGGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 37258 0.68 0.591358
Target:  5'- uGCUCGGcgcGaCGUggcCCuCGGCGCGCu -3'
miRNA:   3'- -CGAGCCua-C-GCAagaGGuGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 63274 0.73 0.313215
Target:  5'- cGUUCGGccGCGUcgagUCgaCC-CGGCGCGCa -3'
miRNA:   3'- -CGAGCCuaCGCA----AGa-GGuGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 10125 0.69 0.518508
Target:  5'- cGCguggCGauGAUGCG--CUCCcgguCGGCGCGCg -3'
miRNA:   3'- -CGa---GC--CUACGCaaGAGGu---GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 57632 0.68 0.61257
Target:  5'- aGCUCGGcgGuCGcgCUCUggaGGCGgGCc -3'
miRNA:   3'- -CGAGCCuaC-GCaaGAGGug-CCGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 30201 0.67 0.644485
Target:  5'- aGCUCGcGcagGCGUUgCUCCACacuGCGgGCc -3'
miRNA:   3'- -CGAGC-Cua-CGCAA-GAGGUGc--CGCgCG- -5'
18985 3' -56.9 NC_004684.1 + 28986 0.73 0.336216
Target:  5'- -aUCaGcgGCGgUCgCCACGGCGCGCc -3'
miRNA:   3'- cgAGcCuaCGCaAGaGGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 65874 0.71 0.440029
Target:  5'- gGCaUCGGucgccGUGCGcgCgcCCAcCGGCGCGCg -3'
miRNA:   3'- -CG-AGCC-----UACGCaaGa-GGU-GCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.