miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 3' -56.9 NC_004684.1 + 7452 1.14 0.000444
Target:  5'- aGCUCGGAUGCGUUCUCCACGGCGCGCa -3'
miRNA:   3'- -CGAGCCUACGCAAGAGGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 50361 0.81 0.105495
Target:  5'- gGCaUCGGcgGCGUUCUUCAcccgcuCGGUGCGCa -3'
miRNA:   3'- -CG-AGCCuaCGCAAGAGGU------GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 14922 0.77 0.189962
Target:  5'- -aUCGGggGCGacgCaCCACGGCGCGCc -3'
miRNA:   3'- cgAGCCuaCGCaa-GaGGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 63274 0.73 0.313215
Target:  5'- cGUUCGGccGCGUcgagUCgaCC-CGGCGCGCa -3'
miRNA:   3'- -CGAGCCuaCGCA----AGa-GGuGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 4784 0.73 0.320747
Target:  5'- gGCUCcgGGGUGCGcgacgCCAugacCGGCGCGCa -3'
miRNA:   3'- -CGAG--CCUACGCaaga-GGU----GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 28986 0.73 0.336216
Target:  5'- -aUCaGcgGCGgUCgCCACGGCGCGCc -3'
miRNA:   3'- cgAGcCuaCGCaAGaGGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 55269 0.72 0.344152
Target:  5'- cGCcagCGG-UGCGUUCUCCGgGG-GUGCu -3'
miRNA:   3'- -CGa--GCCuACGCAAGAGGUgCCgCGCG- -5'
18985 3' -56.9 NC_004684.1 + 9731 0.72 0.376374
Target:  5'- cGCcCGGAUGCcgggaauguucauGUUCagcgccUgCACGGCGCGCu -3'
miRNA:   3'- -CGaGCCUACG-------------CAAG------AgGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 23751 0.72 0.385824
Target:  5'- uGCUCGG-UGCGcagUUCgggCCGUGGgGCGCg -3'
miRNA:   3'- -CGAGCCuACGC---AAGa--GGUGCCgCGCG- -5'
18985 3' -56.9 NC_004684.1 + 65864 0.71 0.39367
Target:  5'- aGCgCGGGUcGCGUcgUCgCCguugagcGCGGCGCGCa -3'
miRNA:   3'- -CGaGCCUA-CGCA--AGaGG-------UGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 26387 0.71 0.394548
Target:  5'- -gUCGGcgGCGaUCUggccaacgccgCCAcCGGCGCGCu -3'
miRNA:   3'- cgAGCCuaCGCaAGA-----------GGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 23687 0.71 0.421475
Target:  5'- gGCcCGGAccagaGCGUggcCUCCaaccugggcgGCGGCGCGCu -3'
miRNA:   3'- -CGaGCCUa----CGCAa--GAGG----------UGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 65874 0.71 0.440029
Target:  5'- gGCaUCGGucgccGUGCGcgCgcCCAcCGGCGCGCg -3'
miRNA:   3'- -CG-AGCC-----UACGCaaGa-GGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 18526 0.7 0.459039
Target:  5'- uGCUCGGGaGCcacgUCggCCGcCGGUGCGCc -3'
miRNA:   3'- -CGAGCCUaCGca--AGa-GGU-GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 31930 0.7 0.468708
Target:  5'- cGgUCGGGgcuCGUUCUCCGUGGC-CGCa -3'
miRNA:   3'- -CgAGCCUac-GCAAGAGGUGCCGcGCG- -5'
18985 3' -56.9 NC_004684.1 + 53806 0.7 0.468708
Target:  5'- -aUCGGGuUGCGc-CUCCAUgcgGGCGUGCg -3'
miRNA:   3'- cgAGCCU-ACGCaaGAGGUG---CCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 58180 0.7 0.474558
Target:  5'- uGCUCGGc-GCGcucccggucgagCUgCACGGUGCGCa -3'
miRNA:   3'- -CGAGCCuaCGCaa----------GAgGUGCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 63997 0.7 0.478479
Target:  5'- cCUUGGcgGCGgUCUCCA-GGCGCu- -3'
miRNA:   3'- cGAGCCuaCGCaAGAGGUgCCGCGcg -5'
18985 3' -56.9 NC_004684.1 + 10125 0.69 0.518508
Target:  5'- cGCguggCGauGAUGCG--CUCCcgguCGGCGCGCg -3'
miRNA:   3'- -CGa---GC--CUACGCaaGAGGu---GCCGCGCG- -5'
18985 3' -56.9 NC_004684.1 + 7336 0.69 0.518508
Target:  5'- uGCUCGG-UGUGcaacCCGcCGGUGCGCg -3'
miRNA:   3'- -CGAGCCuACGCaagaGGU-GCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.