miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 5' -59.8 NC_004684.1 + 2540 0.66 0.468489
Target:  5'- cUGCgGCACCugcgugGAGCGCGCGgaGGCCu- -3'
miRNA:   3'- aACG-UGUGG------CUCGUGCGCagCCGGua -5'
18985 5' -59.8 NC_004684.1 + 58076 0.66 0.452902
Target:  5'- gUGCGCACCgugcagcucgaccggGAGCGCGCcgagcaUGGCCGg -3'
miRNA:   3'- aACGUGUGG---------------CUCGUGCGca----GCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 4243 0.66 0.44905
Target:  5'- -gGCGCGCagGAGC-CGCacUCGGCCAc -3'
miRNA:   3'- aaCGUGUGg-CUCGuGCGc-AGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 26571 0.66 0.44905
Target:  5'- -gGCGCGCCcuGGCGCGCGgCGGUg-- -3'
miRNA:   3'- aaCGUGUGGc-UCGUGCGCaGCCGgua -5'
18985 5' -59.8 NC_004684.1 + 43890 0.66 0.44905
Target:  5'- -cGCAuCGCUGGGCAgGUGgaugacaCGGCCAUc -3'
miRNA:   3'- aaCGU-GUGGCUCGUgCGCa------GCCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 44884 0.66 0.44809
Target:  5'- -cGCGCACCGgacggaaccagguGGCACguugGCGUCGGUg-- -3'
miRNA:   3'- aaCGUGUGGC-------------UCGUG----CGCAGCCGgua -5'
18985 5' -59.8 NC_004684.1 + 65422 0.66 0.446173
Target:  5'- -cGCGCGCCaGGCGCugcgcuggcgugcgGCGcgCGGCCAc -3'
miRNA:   3'- aaCGUGUGGcUCGUG--------------CGCa-GCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 15605 0.66 0.477376
Target:  5'- gUGCGCuACCGGGUgcccgaaggcaacGCGCGcgaGGCCGg -3'
miRNA:   3'- aACGUG-UGGCUCG-------------UGCGCag-CCGGUa -5'
18985 5' -59.8 NC_004684.1 + 49546 0.66 0.478368
Target:  5'- gUGCGCGguggccgacuUCGGGCugGCGU-GGCCu- -3'
miRNA:   3'- aACGUGU----------GGCUCGugCGCAgCCGGua -5'
18985 5' -59.8 NC_004684.1 + 26227 0.66 0.488349
Target:  5'- -cGCGCucaaGCCGAuCAUGgaGUCGGCCAUc -3'
miRNA:   3'- aaCGUG----UGGCUcGUGCg-CAGCCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 12089 0.66 0.488349
Target:  5'- gUGCugGCC---CGCGCGgCGGCCAUc -3'
miRNA:   3'- aACGugUGGcucGUGCGCaGCCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 16700 0.67 0.439499
Target:  5'- -aGCGCGgUGAGCAUGCaggaGGCCAc -3'
miRNA:   3'- aaCGUGUgGCUCGUGCGcag-CCGGUa -5'
18985 5' -59.8 NC_004684.1 + 62503 0.67 0.402495
Target:  5'- cUGCGCACCugGGGCAgCGCGagGGCa-- -3'
miRNA:   3'- aACGUGUGG--CUCGU-GCGCagCCGgua -5'
18985 5' -59.8 NC_004684.1 + 9148 0.67 0.402495
Target:  5'- -gGUcCACCGugagcuGGCugGCGUCGuGCCAc -3'
miRNA:   3'- aaCGuGUGGC------UCGugCGCAGC-CGGUa -5'
18985 5' -59.8 NC_004684.1 + 41298 0.67 0.411561
Target:  5'- -cGCGCACC--GCugGCGUCuGGUCGc -3'
miRNA:   3'- aaCGUGUGGcuCGugCGCAG-CCGGUa -5'
18985 5' -59.8 NC_004684.1 + 66613 0.67 0.393557
Target:  5'- gUGCcCGCCGGGC-CGCGcugaaggCGGCCc- -3'
miRNA:   3'- aACGuGUGGCUCGuGCGCa------GCCGGua -5'
18985 5' -59.8 NC_004684.1 + 50463 0.67 0.411561
Target:  5'- aUGCGCACCGAGCGgGUGaagaacgCcGCCGa -3'
miRNA:   3'- aACGUGUGGCUCGUgCGCa------GcCGGUa -5'
18985 5' -59.8 NC_004684.1 + 35097 0.67 0.436657
Target:  5'- -cGCGCGCC--GCACGCGUcacccggaucagcaCGGCCu- -3'
miRNA:   3'- aaCGUGUGGcuCGUGCGCA--------------GCCGGua -5'
18985 5' -59.8 NC_004684.1 + 61587 0.67 0.439499
Target:  5'- -cGCGCAUCGAGCGCcgccgccuGCG-CGGCgAc -3'
miRNA:   3'- aaCGUGUGGCUCGUG--------CGCaGCCGgUa -5'
18985 5' -59.8 NC_004684.1 + 33215 0.67 0.439499
Target:  5'- -aGCGCaauGCCGAGCAC-C-UUGGCCAg -3'
miRNA:   3'- aaCGUG---UGGCUCGUGcGcAGCCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.