Results 1 - 20 of 127 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 12089 | 0.66 | 0.488349 |
Target: 5'- gUGCugGCC---CGCGCGgCGGCCAUc -3' miRNA: 3'- aACGugUGGcucGUGCGCaGCCGGUA- -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 42309 | 0.66 | 0.44905 |
Target: 5'- gUGCcgACACCGgcGGC-CaCGUCGGCCAc -3' miRNA: 3'- aACG--UGUGGC--UCGuGcGCAGCCGGUa -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 3743 | 0.66 | 0.44809 |
Target: 5'- gUGCGCaucggugccgACCGgcaugacccagguGGCGCGCuUCGGCCAc -3' miRNA: 3'- aACGUG----------UGGC-------------UCGUGCGcAGCCGGUa -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 26227 | 0.66 | 0.488349 |
Target: 5'- -cGCGCucaaGCCGAuCAUGgaGUCGGCCAUc -3' miRNA: 3'- aaCGUG----UGGCUcGUGCg-CAGCCGGUA- -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 36217 | 0.66 | 0.498428 |
Target: 5'- cUGCGCagcguggccaccGCCGAgaccGCugGCGU-GGCCAa -3' miRNA: 3'- aACGUG------------UGGCU----CGugCGCAgCCGGUa -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 49546 | 0.66 | 0.478368 |
Target: 5'- gUGCGCGguggccgacuUCGGGCugGCGU-GGCCu- -3' miRNA: 3'- aACGUGU----------GGCUCGugCGCAgCCGGua -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 8156 | 0.66 | 0.492369 |
Target: 5'- -aGCAgaucgucaaccagauCGCCGGGgGCGCGcUgGGCCAg -3' miRNA: 3'- aaCGU---------------GUGGCUCgUGCGC-AgCCGGUa -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 60920 | 0.66 | 0.498428 |
Target: 5'- -gGcCACGgCGucGCACGCcUCGGCCAg -3' miRNA: 3'- aaC-GUGUgGCu-CGUGCGcAGCCGGUa -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 65422 | 0.66 | 0.446173 |
Target: 5'- -cGCGCGCCaGGCGCugcgcuggcgugcgGCGcgCGGCCAc -3' miRNA: 3'- aaCGUGUGGcUCGUG--------------CGCa-GCCGGUa -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 5136 | 0.66 | 0.498428 |
Target: 5'- gUGggaGCGCCGGGUgccagACGCGUggUGGCCAc -3' miRNA: 3'- aACg--UGUGGCUCG-----UGCGCA--GCCGGUa -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 22255 | 0.66 | 0.478368 |
Target: 5'- -cGCAgGCgCGAGCAUgggaccgccugGCGgCGGCCAa -3' miRNA: 3'- aaCGUgUG-GCUCGUG-----------CGCaGCCGGUa -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 4243 | 0.66 | 0.44905 |
Target: 5'- -gGCGCGCagGAGC-CGCacUCGGCCAc -3' miRNA: 3'- aaCGUGUGg-CUCGuGCGc-AGCCGGUa -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 43890 | 0.66 | 0.44905 |
Target: 5'- -cGCAuCGCUGGGCAgGUGgaugacaCGGCCAUc -3' miRNA: 3'- aaCGU-GUGGCUCGUgCGCa------GCCGGUA- -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 37936 | 0.66 | 0.458714 |
Target: 5'- aUGCACGCCcuGCucgACGCGguggaGGCCAUc -3' miRNA: 3'- aACGUGUGGcuCG---UGCGCag---CCGGUA- -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 58076 | 0.66 | 0.452902 |
Target: 5'- gUGCGCACCgugcagcucgaccggGAGCGCGCcgagcaUGGCCGg -3' miRNA: 3'- aACGUGUGG---------------CUCGUGCGca----GCCGGUa -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 15605 | 0.66 | 0.477376 |
Target: 5'- gUGCGCuACCGGGUgcccgaaggcaacGCGCGcgaGGCCGg -3' miRNA: 3'- aACGUG-UGGCUCG-------------UGCGCag-CCGGUa -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 26571 | 0.66 | 0.44905 |
Target: 5'- -gGCGCGCCcuGGCGCGCGgCGGUg-- -3' miRNA: 3'- aaCGUGUGGc-UCGUGCGCaGCCGgua -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 43971 | 0.66 | 0.468489 |
Target: 5'- -aGCAUcaGCCGuGCGCggGCGUaccCGGCCAg -3' miRNA: 3'- aaCGUG--UGGCuCGUG--CGCA---GCCGGUa -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 65850 | 0.66 | 0.468489 |
Target: 5'- gUGCAcCGCaugCGAGCGCGgGUCGcGUCGUc -3' miRNA: 3'- aACGU-GUG---GCUCGUGCgCAGC-CGGUA- -5' |
|||||||
18985 | 5' | -59.8 | NC_004684.1 | + | 2540 | 0.66 | 0.468489 |
Target: 5'- cUGCgGCACCugcgugGAGCGCGCGgaGGCCu- -3' miRNA: 3'- aACG-UGUGG------CUCGUGCGCagCCGGua -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home