miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 5' -59.8 NC_004684.1 + 7417 1.04 0.000901
Target:  5'- gUUGCACACCGAGCACGCGUCGGCCAUg -3'
miRNA:   3'- -AACGUGUGGCUCGUGCGCAGCCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 57260 0.85 0.022257
Target:  5'- cUGCGC-CCGAGCguGCGCGUCGGCCAc -3'
miRNA:   3'- aACGUGuGGCUCG--UGCGCAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 47852 0.79 0.062487
Target:  5'- -cGCACuACCGGGgGCGCGUCcGGCCAa -3'
miRNA:   3'- aaCGUG-UGGCUCgUGCGCAG-CCGGUa -5'
18985 5' -59.8 NC_004684.1 + 11601 0.79 0.066125
Target:  5'- gUGCgccuggacgacgGCACCGAGCugGcCGUCGGCCGc -3'
miRNA:   3'- aACG------------UGUGGCUCGugC-GCAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 49700 0.77 0.082821
Target:  5'- -aGgGCACCGGGCACGCGcUCGGCgGc -3'
miRNA:   3'- aaCgUGUGGCUCGUGCGC-AGCCGgUa -5'
18985 5' -59.8 NC_004684.1 + 48569 0.77 0.090066
Target:  5'- cUGCGCGCCGAGCuugACGauggaGUUGGCCAg -3'
miRNA:   3'- aACGUGUGGCUCG---UGCg----CAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 65858 0.76 0.100665
Target:  5'- -cGCGCGCCcaccGGCGCGCGgCGGCCAa -3'
miRNA:   3'- aaCGUGUGGc---UCGUGCGCaGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 26491 0.75 0.125478
Target:  5'- -aGCGCGCCGguGGCG-GCGUUGGCCAg -3'
miRNA:   3'- aaCGUGUGGC--UCGUgCGCAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 37178 0.74 0.136168
Target:  5'- -cGuCGCGCCGAGCaucgACGCGcgCGGCCAg -3'
miRNA:   3'- aaC-GUGUGGCUCG----UGCGCa-GCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 2546 0.74 0.137655
Target:  5'- -gGCACGCCGAGCuggccgcccaggcggGCGaUGUCGGCCu- -3'
miRNA:   3'- aaCGUGUGGCUCG---------------UGC-GCAGCCGGua -5'
18985 5' -59.8 NC_004684.1 + 63055 0.74 0.139535
Target:  5'- -cGCAcCACCGAGCACGCcaccaucGUCGGCgCGc -3'
miRNA:   3'- aaCGU-GUGGCUCGUGCG-------CAGCCG-GUa -5'
18985 5' -59.8 NC_004684.1 + 37086 0.74 0.150503
Target:  5'- -cGCGCGCCGgauguacaccuuuaGGUGCGCGUCGGCgAa -3'
miRNA:   3'- aaCGUGUGGC--------------UCGUGCGCAGCCGgUa -5'
18985 5' -59.8 NC_004684.1 + 47609 0.74 0.155857
Target:  5'- -cGCACACCGccgucGGUACucgGCGUCGGCCu- -3'
miRNA:   3'- aaCGUGUGGC-----UCGUG---CGCAGCCGGua -5'
18985 5' -59.8 NC_004684.1 + 63473 0.73 0.164432
Target:  5'- -cGCuACGCCGccaucGGCugGCGCGUCGGCCGc -3'
miRNA:   3'- aaCG-UGUGGC-----UCG--UGCGCAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 23830 0.73 0.164432
Target:  5'- cUGCGCACCGAGCAgUGCG-CcGCCAg -3'
miRNA:   3'- aACGUGUGGCUCGU-GCGCaGcCGGUa -5'
18985 5' -59.8 NC_004684.1 + 30124 0.73 0.168876
Target:  5'- cUGCgcgagcuacagGCACCGcgcaguGUGCGCGUCGGCCAg -3'
miRNA:   3'- aACG-----------UGUGGCu-----CGUGCGCAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 40756 0.73 0.178088
Target:  5'- cUUGCugGCCGAGCGCgacugGCGg-GGCCAg -3'
miRNA:   3'- -AACGugUGGCUCGUG-----CGCagCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 19620 0.73 0.178088
Target:  5'- -gGCGCAcCCGcAGCugGCGUUGaGCCAg -3'
miRNA:   3'- aaCGUGU-GGC-UCGugCGCAGC-CGGUa -5'
18985 5' -59.8 NC_004684.1 + 63364 0.72 0.192743
Target:  5'- -aGCGCACCGAGCggccgACGCGcCaGCCGa -3'
miRNA:   3'- aaCGUGUGGCUCG-----UGCGCaGcCGGUa -5'
18985 5' -59.8 NC_004684.1 + 64751 0.72 0.197341
Target:  5'- cUGCugGCCGAGCugGUgccaggcGUCGGUCu- -3'
miRNA:   3'- aACGugUGGCUCGugCG-------CAGCCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.