miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 5' -59.8 NC_004684.1 + 749 0.71 0.243162
Target:  5'- -cGCACGCUGucGUGCGCGUCGGUg-- -3'
miRNA:   3'- aaCGUGUGGCu-CGUGCGCAGCCGgua -5'
18985 5' -59.8 NC_004684.1 + 1228 0.69 0.311533
Target:  5'- -gGCACGCCcGGCAUGCcgUGGCCGUc -3'
miRNA:   3'- aaCGUGUGGcUCGUGCGcaGCCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 2540 0.66 0.468489
Target:  5'- cUGCgGCACCugcgugGAGCGCGCGgaGGCCu- -3'
miRNA:   3'- aACG-UGUGG------CUCGUGCGCagCCGGua -5'
18985 5' -59.8 NC_004684.1 + 2546 0.74 0.137655
Target:  5'- -gGCACGCCGAGCuggccgcccaggcggGCGaUGUCGGCCu- -3'
miRNA:   3'- aaCGUGUGGCUCG---------------UGC-GCAGCCGGua -5'
18985 5' -59.8 NC_004684.1 + 2602 0.67 0.443306
Target:  5'- -aGUACGCCGAcgcggaguucuggaaGCAgGCGgUGGCCAa -3'
miRNA:   3'- aaCGUGUGGCU---------------CGUgCGCaGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 3743 0.66 0.44809
Target:  5'- gUGCGCaucggugccgACCGgcaugacccagguGGCGCGCuUCGGCCAc -3'
miRNA:   3'- aACGUG----------UGGC-------------UCGUGCGcAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 4243 0.66 0.44905
Target:  5'- -gGCGCGCagGAGC-CGCacUCGGCCAc -3'
miRNA:   3'- aaCGUGUGg-CUCGuGCGc-AGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 5136 0.66 0.498428
Target:  5'- gUGggaGCGCCGGGUgccagACGCGUggUGGCCAc -3'
miRNA:   3'- aACg--UGUGGCUCG-----UGCGCA--GCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 6301 0.66 0.458714
Target:  5'- -aGCugGCCGAGauCGCGCcggaGGCCAUc -3'
miRNA:   3'- aaCGugUGGCUC--GUGCGcag-CCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 6383 0.68 0.367529
Target:  5'- gUUGCGCAgCGuGUugGCGaagUUGGCCGa -3'
miRNA:   3'- -AACGUGUgGCuCGugCGC---AGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 7141 0.71 0.225236
Target:  5'- aUGCACACCGccaGCGCGUCGGaCUg- -3'
miRNA:   3'- aACGUGUGGCucgUGCGCAGCC-GGua -5'
18985 5' -59.8 NC_004684.1 + 7417 1.04 0.000901
Target:  5'- gUUGCACACCGAGCACGCGUCGGCCAUg -3'
miRNA:   3'- -AACGUGUGGCUCGUGCGCAGCCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 8156 0.66 0.492369
Target:  5'- -aGCAgaucgucaaccagauCGCCGGGgGCGCGcUgGGCCAg -3'
miRNA:   3'- aaCGU---------------GUGGCUCgUGCGC-AgCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 8224 0.69 0.326845
Target:  5'- cUGCAC-CCGAGCAC-CGacgCGGUCGUc -3'
miRNA:   3'- aACGUGuGGCUCGUGcGCa--GCCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 9148 0.67 0.402495
Target:  5'- -gGUcCACCGugagcuGGCugGCGUCGuGCCAc -3'
miRNA:   3'- aaCGuGUGGC------UCGugCGCAGC-CGGUa -5'
18985 5' -59.8 NC_004684.1 + 9203 0.68 0.384749
Target:  5'- -gGCGCAgUGGGCGCGUgaccggGUgGGCCAg -3'
miRNA:   3'- aaCGUGUgGCUCGUGCG------CAgCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 10244 0.71 0.243162
Target:  5'- -aGCugGCCGuGCGCGUGgagCgGGCCAa -3'
miRNA:   3'- aaCGugUGGCuCGUGCGCa--G-CCGGUa -5'
18985 5' -59.8 NC_004684.1 + 10600 0.69 0.31912
Target:  5'- gUGCGCcugACCGucGGCGgcccagUGCGUCGGCCGg -3'
miRNA:   3'- aACGUG---UGGC--UCGU------GCGCAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 11446 0.67 0.420752
Target:  5'- -aGCugACCGGGCcgACGCGcaccaCGGUCAc -3'
miRNA:   3'- aaCGugUGGCUCG--UGCGCa----GCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 11534 0.66 0.462611
Target:  5'- gUGCGCGucggcccggucagcuCCGGGUugGCGaagugggCGGCCGg -3'
miRNA:   3'- aACGUGU---------------GGCUCGugCGCa------GCCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.