miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 5' -59.8 NC_004684.1 + 50017 0.69 0.326845
Target:  5'- gUGCGCACCGucGGCGgcaGCGU-GGCCGg -3'
miRNA:   3'- aACGUGUGGC--UCGUg--CGCAgCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 57550 0.7 0.268891
Target:  5'- -aGCGCgaccGCCGAGCuGCGCcgGUUGGCCGa -3'
miRNA:   3'- aaCGUG----UGGCUCG-UGCG--CAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 13394 0.7 0.282559
Target:  5'- -cGCugGCCGAuugaGCcggACGUGUCGGCCc- -3'
miRNA:   3'- aaCGugUGGCU----CG---UGCGCAGCCGGua -5'
18985 5' -59.8 NC_004684.1 + 65773 0.7 0.282559
Target:  5'- -cGCGCGCCGgugGGCGCGCGcaCGGCgAc -3'
miRNA:   3'- aaCGUGUGGC---UCGUGCGCa-GCCGgUa -5'
18985 5' -59.8 NC_004684.1 + 65918 0.7 0.289597
Target:  5'- -cGcCGCACCGGGCACGUc-CGGCCc- -3'
miRNA:   3'- aaC-GUGUGGCUCGUGCGcaGCCGGua -5'
18985 5' -59.8 NC_004684.1 + 15855 0.69 0.296771
Target:  5'- -cGCACGCCGAggucaucgaGCACGUGgccgccagCGGCCc- -3'
miRNA:   3'- aaCGUGUGGCU---------CGUGCGCa-------GCCGGua -5'
18985 5' -59.8 NC_004684.1 + 61205 0.69 0.296771
Target:  5'- -cGUACACCuGGCcguuCGCGUCGGCgAUc -3'
miRNA:   3'- aaCGUGUGGcUCGu---GCGCAGCCGgUA- -5'
18985 5' -59.8 NC_004684.1 + 27842 0.69 0.316829
Target:  5'- cUGgGCACCGAGCGCGCuGUgcacgcaggagugcCGGUCGc -3'
miRNA:   3'- aACgUGUGGCUCGUGCG-CA--------------GCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 21068 0.69 0.326845
Target:  5'- gUGCugACCGGGCACcuGgGcCGGUCAg -3'
miRNA:   3'- aACGugUGGCUCGUG--CgCaGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 12898 0.7 0.253838
Target:  5'- cUGCGCucgccgccagcgguGCCGGuGCGC-CGUCGGCCAa -3'
miRNA:   3'- aACGUG--------------UGGCU-CGUGcGCAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 10244 0.71 0.243162
Target:  5'- -aGCugGCCGuGCGCGUGgagCgGGCCAa -3'
miRNA:   3'- aaCGugUGGCuCGUGCGCa--G-CCGGUa -5'
18985 5' -59.8 NC_004684.1 + 53603 0.71 0.243162
Target:  5'- -aGUGCGCCgcucuuGAGCACGCG-CGGCCc- -3'
miRNA:   3'- aaCGUGUGG------CUCGUGCGCaGCCGGua -5'
18985 5' -59.8 NC_004684.1 + 49700 0.77 0.082821
Target:  5'- -aGgGCACCGGGCACGCGcUCGGCgGc -3'
miRNA:   3'- aaCgUGUGGCUCGUGCGC-AGCCGgUa -5'
18985 5' -59.8 NC_004684.1 + 48569 0.77 0.090066
Target:  5'- cUGCGCGCCGAGCuugACGauggaGUUGGCCAg -3'
miRNA:   3'- aACGUGUGGCUCG---UGCg----CAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 37178 0.74 0.136168
Target:  5'- -cGuCGCGCCGAGCaucgACGCGcgCGGCCAg -3'
miRNA:   3'- aaC-GUGUGGCUCG----UGCGCa-GCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 47609 0.74 0.155857
Target:  5'- -cGCACACCGccgucGGUACucgGCGUCGGCCu- -3'
miRNA:   3'- aaCGUGUGGC-----UCGUG---CGCAGCCGGua -5'
18985 5' -59.8 NC_004684.1 + 30124 0.73 0.168876
Target:  5'- cUGCgcgagcuacagGCACCGcgcaguGUGCGCGUCGGCCAg -3'
miRNA:   3'- aACG-----------UGUGGCu-----CGUGCGCAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 63364 0.72 0.192743
Target:  5'- -aGCGCACCGAGCggccgACGCGcCaGCCGa -3'
miRNA:   3'- aaCGUGUGGCUCG-----UGCGCaGcCGGUa -5'
18985 5' -59.8 NC_004684.1 + 64751 0.72 0.197341
Target:  5'- cUGCugGCCGAGCugGUgccaggcGUCGGUCu- -3'
miRNA:   3'- aACGugUGGCUCGugCG-------CAGCCGGua -5'
18985 5' -59.8 NC_004684.1 + 63174 0.71 0.242546
Target:  5'- gUUGCGCGCCGGGUcgacucgACGCGgccgaaCGGCCc- -3'
miRNA:   3'- -AACGUGUGGCUCG-------UGCGCa-----GCCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.