miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 5' -59.8 NC_004684.1 + 37936 0.66 0.458714
Target:  5'- aUGCACGCCcuGCucgACGCGguggaGGCCAUc -3'
miRNA:   3'- aACGUGUGGcuCG---UGCGCag---CCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 6301 0.66 0.458714
Target:  5'- -aGCugGCCGAGauCGCGCcggaGGCCAUc -3'
miRNA:   3'- aaCGugUGGCUC--GUGCGcag-CCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 58076 0.66 0.452902
Target:  5'- gUGCGCACCgugcagcucgaccggGAGCGCGCcgagcaUGGCCGg -3'
miRNA:   3'- aACGUGUGG---------------CUCGUGCGca----GCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 4243 0.66 0.44905
Target:  5'- -gGCGCGCagGAGC-CGCacUCGGCCAc -3'
miRNA:   3'- aaCGUGUGg-CUCGuGCGc-AGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 43890 0.66 0.44905
Target:  5'- -cGCAuCGCUGGGCAgGUGgaugacaCGGCCAUc -3'
miRNA:   3'- aaCGU-GUGGCUCGUgCGCa------GCCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 56258 0.66 0.44905
Target:  5'- -aGCGcCGCCGucgucGC-CGuCGUCGGCCAg -3'
miRNA:   3'- aaCGU-GUGGCu----CGuGC-GCAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 42309 0.66 0.44905
Target:  5'- gUGCcgACACCGgcGGC-CaCGUCGGCCAc -3'
miRNA:   3'- aACG--UGUGGC--UCGuGcGCAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 26571 0.66 0.44905
Target:  5'- -gGCGCGCCcuGGCGCGCGgCGGUg-- -3'
miRNA:   3'- aaCGUGUGGc-UCGUGCGCaGCCGgua -5'
18985 5' -59.8 NC_004684.1 + 44884 0.66 0.44809
Target:  5'- -cGCGCACCGgacggaaccagguGGCACguugGCGUCGGUg-- -3'
miRNA:   3'- aaCGUGUGGC-------------UCGUG----CGCAGCCGgua -5'
18985 5' -59.8 NC_004684.1 + 3743 0.66 0.44809
Target:  5'- gUGCGCaucggugccgACCGgcaugacccagguGGCGCGCuUCGGCCAc -3'
miRNA:   3'- aACGUG----------UGGC-------------UCGUGCGcAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 65422 0.66 0.446173
Target:  5'- -cGCGCGCCaGGCGCugcgcuggcgugcgGCGcgCGGCCAc -3'
miRNA:   3'- aaCGUGUGGcUCGUG--------------CGCa-GCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 2602 0.67 0.443306
Target:  5'- -aGUACGCCGAcgcggaguucuggaaGCAgGCGgUGGCCAa -3'
miRNA:   3'- aaCGUGUGGCU---------------CGUgCGCaGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 45882 0.67 0.439499
Target:  5'- gUGCGCGCCGucCACGCuggCGGCgAa -3'
miRNA:   3'- aACGUGUGGCucGUGCGca-GCCGgUa -5'
18985 5' -59.8 NC_004684.1 + 61587 0.67 0.439499
Target:  5'- -cGCGCAUCGAGCGCcgccgccuGCG-CGGCgAc -3'
miRNA:   3'- aaCGUGUGGCUCGUG--------CGCaGCCGgUa -5'
18985 5' -59.8 NC_004684.1 + 33215 0.67 0.439499
Target:  5'- -aGCGCaauGCCGAGCAC-C-UUGGCCAg -3'
miRNA:   3'- aaCGUG---UGGCUCGUGcGcAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 16700 0.67 0.439499
Target:  5'- -aGCGCGgUGAGCAUGCaggaGGCCAc -3'
miRNA:   3'- aaCGUGUgGCUCGUGCGcag-CCGGUa -5'
18985 5' -59.8 NC_004684.1 + 23657 0.67 0.43855
Target:  5'- cUGCugACCGGGUACaccgacgGCcugGUCGGCCc- -3'
miRNA:   3'- aACGugUGGCUCGUG-------CG---CAGCCGGua -5'
18985 5' -59.8 NC_004684.1 + 35097 0.67 0.436657
Target:  5'- -cGCGCGCC--GCACGCGUcacccggaucagcaCGGCCu- -3'
miRNA:   3'- aaCGUGUGGcuCGUGCGCA--------------GCCGGua -5'
18985 5' -59.8 NC_004684.1 + 26320 0.67 0.430065
Target:  5'- -gGC-CGCCGGGCcgccgauugccgACGCGgugcgcUCGGCCAUu -3'
miRNA:   3'- aaCGuGUGGCUCG------------UGCGC------AGCCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 65998 0.67 0.429129
Target:  5'- -cGCugGCC-AGUGCaacggcggccuugGCGUCGGCCAg -3'
miRNA:   3'- aaCGugUGGcUCGUG-------------CGCAGCCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.