miRNA display CGI


Results 41 - 60 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 3' -52.7 NC_004684.1 + 4776 0.66 0.889415
Target:  5'- aGCGCCacGGcuccGggGUGCGCGAC-GCCa -3'
miRNA:   3'- -CGUGG--CCua--CuuCAUGUGCUGgUGGc -5'
18986 3' -52.7 NC_004684.1 + 63935 0.66 0.889415
Target:  5'- cGCGCCgaacuGGGUGccGUaccACAUGGCCACgGu -3'
miRNA:   3'- -CGUGG-----CCUACuuCA---UGUGCUGGUGgC- -5'
18986 3' -52.7 NC_004684.1 + 11671 0.66 0.888691
Target:  5'- cGCACCGGcgGGcuGGUGuggaacuCGCGguaGCCGCUGu -3'
miRNA:   3'- -CGUGGCCuaCU--UCAU-------GUGC---UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 42787 0.66 0.88503
Target:  5'- aCGCCGG-UGAccagaucguugaacuGGUugGCcACCGCCGu -3'
miRNA:   3'- cGUGGCCuACU---------------UCAugUGcUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 5893 0.66 0.88503
Target:  5'- -gACCGGGUGgcGgcggcgcugaucgcGCACGACCgGCUGg -3'
miRNA:   3'- cgUGGCCUACuuCa-------------UGUGCUGG-UGGC- -5'
18986 3' -52.7 NC_004684.1 + 57259 0.66 0.882056
Target:  5'- uGCGCCcGAgc--GUGCGCGucgGCCACCGc -3'
miRNA:   3'- -CGUGGcCUacuuCAUGUGC---UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 37100 0.66 0.882056
Target:  5'- uGCugCGGAgaacguUGAGGaggGCugGcguGCCGCCa -3'
miRNA:   3'- -CGugGCCU------ACUUCa--UGugC---UGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 15377 0.66 0.882056
Target:  5'- cGCGCUGG-UGAucGGcUACGaGGCCGCCa -3'
miRNA:   3'- -CGUGGCCuACU--UC-AUGUgCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 33422 0.66 0.881306
Target:  5'- uGCACCGaGGUGGccagcgaGGUcgACAUGAUCAgCGa -3'
miRNA:   3'- -CGUGGC-CUACU-------UCA--UGUGCUGGUgGC- -5'
18986 3' -52.7 NC_004684.1 + 47229 0.67 0.875217
Target:  5'- gGCACCGGGgccgccuacgccaccGAGGcGCACGcuCUGCCGg -3'
miRNA:   3'- -CGUGGCCUa--------------CUUCaUGUGCu-GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 64801 0.67 0.874444
Target:  5'- -gACCcGAUGGAGgcCcugGCGGCCGCCa -3'
miRNA:   3'- cgUGGcCUACUUCauG---UGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 66772 0.67 0.874444
Target:  5'- cCGCCGGGUGGgaAGacCugGgcACCGCCGg -3'
miRNA:   3'- cGUGGCCUACU--UCauGugC--UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 35869 0.67 0.874444
Target:  5'- uGCGCCacGAUGGAGcgcgGCGCGcgcugggucugcACCACCa -3'
miRNA:   3'- -CGUGGc-CUACUUCa---UGUGC------------UGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 51179 0.67 0.874444
Target:  5'- uGCGCCGGGccaUGGAccGCGCGcCCugGCCGu -3'
miRNA:   3'- -CGUGGCCU---ACUUcaUGUGCuGG--UGGC- -5'
18986 3' -52.7 NC_004684.1 + 52836 0.67 0.874444
Target:  5'- cGCACCaGGUGuccagcGGUACGCcgucaucguugGugCACCGg -3'
miRNA:   3'- -CGUGGcCUACu-----UCAUGUG-----------CugGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 52565 0.67 0.874444
Target:  5'- cGCGCUGGAgguGGUG-GCGGCCauGCCGu -3'
miRNA:   3'- -CGUGGCCUacuUCAUgUGCUGG--UGGC- -5'
18986 3' -52.7 NC_004684.1 + 58375 0.67 0.872112
Target:  5'- uCACCaGGUGAugacaguuucgaccGGUACcguuCGACCGCCu -3'
miRNA:   3'- cGUGGcCUACU--------------UCAUGu---GCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 22416 0.67 0.867382
Target:  5'- uGUACCGGGUGGcgggccacgGGgagcaucgggguucgGCACcGCCGCCGc -3'
miRNA:   3'- -CGUGGCCUACU---------UCa--------------UGUGcUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 51833 0.67 0.866585
Target:  5'- uGCGCUGGAgcaucacccAGUGCGCGAUCuCCu -3'
miRNA:   3'- -CGUGGCCUacu------UCAUGUGCUGGuGGc -5'
18986 3' -52.7 NC_004684.1 + 65832 0.67 0.866585
Target:  5'- gGCACCGGcgGcuc-ACAgGugCACCGc -3'
miRNA:   3'- -CGUGGCCuaCuucaUGUgCugGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.