miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 3' -52.7 NC_004684.1 + 43890 0.66 0.902683
Target:  5'- cGCAUCGcugggcaGGUGGAugACACGGCCAUCu -3'
miRNA:   3'- -CGUGGC-------CUACUUcaUGUGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 6749 0.66 0.901331
Target:  5'- gGC-CCGGAgccgucGGGUGCACGAagugcucgacggcaUCGCCGg -3'
miRNA:   3'- -CGuGGCCUac----UUCAUGUGCU--------------GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 19034 0.66 0.901331
Target:  5'- gGCACCGGcggccgggcaggucAUGAAGUGCGgcaGGCUGgCGu -3'
miRNA:   3'- -CGUGGCC--------------UACUUCAUGUg--CUGGUgGC- -5'
18986 3' -52.7 NC_004684.1 + 25098 0.66 0.901331
Target:  5'- uGCACCGGcgcUGA---GCGCGACCggguugggcaggauGCCGc -3'
miRNA:   3'- -CGUGGCCu--ACUucaUGUGCUGG--------------UGGC- -5'
18986 3' -52.7 NC_004684.1 + 13284 0.66 0.896516
Target:  5'- cCGCCGG-UGGcuGGUGCGCG-CCGUCGg -3'
miRNA:   3'- cGUGGCCuACU--UCAUGUGCuGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 44278 0.66 0.896516
Target:  5'- aGUACCGc--GAGGUGCugGcGCgCGCCGg -3'
miRNA:   3'- -CGUGGCcuaCUUCAUGugC-UG-GUGGC- -5'
18986 3' -52.7 NC_004684.1 + 43626 0.66 0.896516
Target:  5'- uCACCGuucgGAGGUgGCGCaGCCACCGc -3'
miRNA:   3'- cGUGGCcua-CUUCA-UGUGcUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 66881 0.66 0.896516
Target:  5'- aGCGCCGG-UGgcGaccuucgGCGCGGCCuuCGg -3'
miRNA:   3'- -CGUGGCCuACuuCa------UGUGCUGGugGC- -5'
18986 3' -52.7 NC_004684.1 + 9804 0.66 0.896516
Target:  5'- uGCGCCGG-UGGcacccgACGCucaaGGCCACCGu -3'
miRNA:   3'- -CGUGGCCuACUuca---UGUG----CUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 10889 0.66 0.896516
Target:  5'- cCGCCGGAUGccgcuacGGUGC-CGA-CGCCGu -3'
miRNA:   3'- cGUGGCCUACu------UCAUGuGCUgGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 59625 0.66 0.896516
Target:  5'- cGCGCUGGc---GGUGCAgGACCugUGc -3'
miRNA:   3'- -CGUGGCCuacuUCAUGUgCUGGugGC- -5'
18986 3' -52.7 NC_004684.1 + 11516 0.66 0.896516
Target:  5'- aGCuCCGGGUuggcGAAGUGgGCGGCCGg-- -3'
miRNA:   3'- -CGuGGCCUA----CUUCAUgUGCUGGUggc -5'
18986 3' -52.7 NC_004684.1 + 66609 0.66 0.896516
Target:  5'- cCGCCGGGccgcgcUGAAGgcggccCGCGagGCCGCCGc -3'
miRNA:   3'- cGUGGCCU------ACUUCau----GUGC--UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 49676 0.66 0.889415
Target:  5'- cCugCGGGugUGAGGU-CugGACCGCa- -3'
miRNA:   3'- cGugGCCU--ACUUCAuGugCUGGUGgc -5'
18986 3' -52.7 NC_004684.1 + 63935 0.66 0.889415
Target:  5'- cGCGCCgaacuGGGUGccGUaccACAUGGCCACgGu -3'
miRNA:   3'- -CGUGG-----CCUACuuCA---UGUGCUGGUGgC- -5'
18986 3' -52.7 NC_004684.1 + 25215 0.66 0.889415
Target:  5'- cGCGCUGG-UGAug-GCgguGACCACCGg -3'
miRNA:   3'- -CGUGGCCuACUucaUGug-CUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 35176 0.66 0.889415
Target:  5'- gGCACCGacggcuGAUGGuuGaGCGCGAagcuCCACCGg -3'
miRNA:   3'- -CGUGGC------CUACUu-CaUGUGCU----GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 174 0.66 0.889415
Target:  5'- -gACCGGGUu-GGU-CGgGACCACCa -3'
miRNA:   3'- cgUGGCCUAcuUCAuGUgCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 5964 0.66 0.889415
Target:  5'- cGCGCCGG-UGA-----GCGACCgGCCGa -3'
miRNA:   3'- -CGUGGCCuACUucaugUGCUGG-UGGC- -5'
18986 3' -52.7 NC_004684.1 + 61921 0.66 0.889415
Target:  5'- uCGCgGGGUGcGGgcCACGGcacCCGCCGg -3'
miRNA:   3'- cGUGgCCUACuUCauGUGCU---GGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.