miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 3' -52.7 NC_004684.1 + 21421 0.73 0.530475
Target:  5'- cGCACaCGGAUGcggcGGUcGCGCcgGACCACCGc -3'
miRNA:   3'- -CGUG-GCCUACu---UCA-UGUG--CUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 52761 0.73 0.541053
Target:  5'- -aACCGGGUcaaaGAGGUGCugG-CCACCu -3'
miRNA:   3'- cgUGGCCUA----CUUCAUGugCuGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 25208 0.73 0.545304
Target:  5'- gGCACCGGGUGGcuucaccggcacgcuGG-ACGCGAacaaCACCGc -3'
miRNA:   3'- -CGUGGCCUACU---------------UCaUGUGCUg---GUGGC- -5'
18986 3' -52.7 NC_004684.1 + 65404 0.73 0.551701
Target:  5'- gGCGCUGGccGuGGUGCACagcgaGGCCGCCGu -3'
miRNA:   3'- -CGUGGCCuaCuUCAUGUG-----CUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 64664 0.73 0.551701
Target:  5'- cGUACCGGGcc-GGUACACGAuCCugCGc -3'
miRNA:   3'- -CGUGGCCUacuUCAUGUGCU-GGugGC- -5'
18986 3' -52.7 NC_004684.1 + 37084 0.73 0.562411
Target:  5'- cGCGCCGGAUGuacaccuuuAGGUGCGCGucgGCgaaACCGa -3'
miRNA:   3'- -CGUGGCCUAC---------UUCAUGUGC---UGg--UGGC- -5'
18986 3' -52.7 NC_004684.1 + 37965 0.73 0.562411
Target:  5'- aGCaACCGGGUacgGAucgugcgccaauGGUGCGCGGCCAUCa -3'
miRNA:   3'- -CG-UGGCCUA---CU------------UCAUGUGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 51922 0.72 0.573177
Target:  5'- cGCACUGGGUGAugcuccagcgcAGcgcGCGCGGCCugGCCGu -3'
miRNA:   3'- -CGUGGCCUACU-----------UCa--UGUGCUGG--UGGC- -5'
18986 3' -52.7 NC_004684.1 + 20737 0.72 0.573177
Target:  5'- uGCGCCGGAccucUGggGUcaGCuCGACgCGCUGg -3'
miRNA:   3'- -CGUGGCCU----ACuuCA--UGuGCUG-GUGGC- -5'
18986 3' -52.7 NC_004684.1 + 61536 0.72 0.583991
Target:  5'- aGCACCGGcgGcGAG-ACAauGCCGCCGg -3'
miRNA:   3'- -CGUGGCCuaC-UUCaUGUgcUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 26581 0.72 0.583991
Target:  5'- gGCGCgCGGcgGu-GUGCGCGgguucGCCACCGg -3'
miRNA:   3'- -CGUG-GCCuaCuuCAUGUGC-----UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 8598 0.72 0.591584
Target:  5'- cGCGCCGG-UGGccucgaacaagcccGGUGCACcggcACCGCCGa -3'
miRNA:   3'- -CGUGGCCuACU--------------UCAUGUGc---UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 19672 0.72 0.594844
Target:  5'- cCGCCGGAcUGGgcaGGUGCACGAC-GCCa -3'
miRNA:   3'- cGUGGCCU-ACU---UCAUGUGCUGgUGGc -5'
18986 3' -52.7 NC_004684.1 + 47328 0.72 0.594844
Target:  5'- uCGCCGGuGUGGGcGUcgaGCAUGGCCACCa -3'
miRNA:   3'- cGUGGCC-UACUU-CA---UGUGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 39183 0.72 0.605728
Target:  5'- uCACCGGGUGc-GUAgGC-ACCACCGg -3'
miRNA:   3'- cGUGGCCUACuuCAUgUGcUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 65775 0.72 0.616634
Target:  5'- cGCGCCGG-UGGGcgcGcGCACGGCgACCGa -3'
miRNA:   3'- -CGUGGCCuACUU---CaUGUGCUGgUGGC- -5'
18986 3' -52.7 NC_004684.1 + 3577 0.71 0.626462
Target:  5'- uGCGCCacagcggGGAcgUGGAGUacgucgcgcACugGGCCGCCGa -3'
miRNA:   3'- -CGUGG-------CCU--ACUUCA---------UGugCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 60229 0.71 0.626462
Target:  5'- uGCACCaGGAgcaAGGUGCGCGACCcggucacACCu -3'
miRNA:   3'- -CGUGG-CCUac-UUCAUGUGCUGG-------UGGc -5'
18986 3' -52.7 NC_004684.1 + 44628 0.71 0.638478
Target:  5'- aGCGCCGGggGGagcgGGUACuCGGcCCACUGc -3'
miRNA:   3'- -CGUGGCCuaCU----UCAUGuGCU-GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 54522 0.71 0.638478
Target:  5'- uCACCGGcgGggGU--ACGAgCGCCGu -3'
miRNA:   3'- cGUGGCCuaCuuCAugUGCUgGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.