miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 3' -52.7 NC_004684.1 + 6185 0.68 0.832822
Target:  5'- gGCACCGGGc-AGGUACAugucgaUGGCCuCCGg -3'
miRNA:   3'- -CGUGGCCUacUUCAUGU------GCUGGuGGC- -5'
18986 3' -52.7 NC_004684.1 + 6577 0.69 0.745692
Target:  5'- aGCACCcGAUGucGaACACcACCGCCGc -3'
miRNA:   3'- -CGUGGcCUACuuCaUGUGcUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 6749 0.66 0.901331
Target:  5'- gGC-CCGGAgccgucGGGUGCACGAagugcucgacggcaUCGCCGg -3'
miRNA:   3'- -CGuGGCCUac----UUCAUGUGCU--------------GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 7453 0.69 0.776151
Target:  5'- -gACUGGcUGGAGgaccgaGCAUGACCAUCGa -3'
miRNA:   3'- cgUGGCCuACUUCa-----UGUGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 7564 0.7 0.680933
Target:  5'- gGCcCCGGGUGGcgcuggugcggcuGGUGCGCGGCaacCCGg -3'
miRNA:   3'- -CGuGGCCUACU-------------UCAUGUGCUGgu-GGC- -5'
18986 3' -52.7 NC_004684.1 + 7695 1.12 0.001716
Target:  5'- gGCACCGGAUGAAGUACACGACCACCGg -3'
miRNA:   3'- -CGUGGCCUACUUCAUGUGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 8323 0.79 0.273528
Target:  5'- aCGCCGGAaGAGGUGCGCG-CCAgCGa -3'
miRNA:   3'- cGUGGCCUaCUUCAUGUGCuGGUgGC- -5'
18986 3' -52.7 NC_004684.1 + 8598 0.72 0.591584
Target:  5'- cGCGCCGG-UGGccucgaacaagcccGGUGCACcggcACCGCCGa -3'
miRNA:   3'- -CGUGGCCuACU--------------UCAUGUGc---UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 8694 0.67 0.850154
Target:  5'- uGCACCGGGcuu-GUuCGaGGCCACCGg -3'
miRNA:   3'- -CGUGGCCUacuuCAuGUgCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 9804 0.66 0.896516
Target:  5'- uGCGCCGG-UGGcacccgACGCucaaGGCCACCGu -3'
miRNA:   3'- -CGUGGCCuACUuca---UGUG----CUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 10212 0.66 0.915613
Target:  5'- aGCGCUGGAggUGccugcccAGGUGCGCGAgCAgCUGg -3'
miRNA:   3'- -CGUGGCCU--AC-------UUCAUGUGCUgGU-GGC- -5'
18986 3' -52.7 NC_004684.1 + 10352 0.69 0.755973
Target:  5'- cCGCCGGG-GAGGacaUGCGCGAgaucgcgcgcaCCGCCGg -3'
miRNA:   3'- cGUGGCCUaCUUC---AUGUGCU-----------GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 10489 0.67 0.850154
Target:  5'- gGCAagacCCGGccGAcGcACugGGCCGCCGa -3'
miRNA:   3'- -CGU----GGCCuaCUuCaUGugCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 10889 0.66 0.896516
Target:  5'- cCGCCGGAUGccgcuacGGUGC-CGA-CGCCGu -3'
miRNA:   3'- cGUGGCCUACu------UCAUGuGCUgGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 11249 0.68 0.80529
Target:  5'- uCGCUGGcgGccAGGUccaccgacgGCGCGACCACCu -3'
miRNA:   3'- cGUGGCCuaC--UUCA---------UGUGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 11516 0.66 0.896516
Target:  5'- aGCuCCGGGUuggcGAAGUGgGCGGCCGg-- -3'
miRNA:   3'- -CGuGGCCUA----CUUCAUgUGCUGGUggc -5'
18986 3' -52.7 NC_004684.1 + 11671 0.66 0.888691
Target:  5'- cGCACCGGcgGGcuGGUGuggaacuCGCGguaGCCGCUGu -3'
miRNA:   3'- -CGUGGCCuaCU--UCAU-------GUGC---UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 11895 0.7 0.692809
Target:  5'- aCACCGGGauucaacGUGCGCGgcACCACCGa -3'
miRNA:   3'- cGUGGCCUacuu---CAUGUGC--UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 12200 0.68 0.814659
Target:  5'- -aGCCGGGgucgGggGuUGCgugAUGGCCGCCGc -3'
miRNA:   3'- cgUGGCCUa---CuuC-AUG---UGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 12394 0.7 0.735297
Target:  5'- uGCGCuCGGu---GGUGCACGGUCGCCGu -3'
miRNA:   3'- -CGUG-GCCuacuUCAUGUGCUGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.