miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 3' -52.7 NC_004684.1 + 174 0.66 0.889415
Target:  5'- -gACCGGGUu-GGU-CGgGACCACCa -3'
miRNA:   3'- cgUGGCCUAcuUCAuGUgCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 314 0.66 0.912481
Target:  5'- cGCGCCGGggGuucuuguAGUAggugcucagcguugcCAgGGCCACCu -3'
miRNA:   3'- -CGUGGCCuaCu------UCAU---------------GUgCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 422 0.68 0.814659
Target:  5'- uGCACUGGGUcGAcGUGgACGAggaCACCGc -3'
miRNA:   3'- -CGUGGCCUA-CUuCAUgUGCUg--GUGGC- -5'
18986 3' -52.7 NC_004684.1 + 1365 0.7 0.7248
Target:  5'- cGUACCGGA------ACAUGGCCACCa -3'
miRNA:   3'- -CGUGGCCUacuucaUGUGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 1385 0.76 0.401848
Target:  5'- aGCuCCGGGUGggGcg-GCGGCUACCGg -3'
miRNA:   3'- -CGuGGCCUACuuCaugUGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 1486 0.75 0.429815
Target:  5'- cGCGCCGGAgguGGcccgccuguUGCGCGACCACUa -3'
miRNA:   3'- -CGUGGCCUacuUC---------AUGUGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 1718 0.68 0.795741
Target:  5'- gGCACCGGcc--AGUGcCGCGACCucACCa -3'
miRNA:   3'- -CGUGGCCuacuUCAU-GUGCUGG--UGGc -5'
18986 3' -52.7 NC_004684.1 + 2392 0.68 0.80529
Target:  5'- uCGCCGGGUGcggcGUGCACGucguGgCACCGu -3'
miRNA:   3'- cGUGGCCUACuu--CAUGUGC----UgGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 2714 0.71 0.638478
Target:  5'- gGUGCCGGggGcAAGUgcgccacaccGCACGGCCACaCGu -3'
miRNA:   3'- -CGUGGCCuaC-UUCA----------UGUGCUGGUG-GC- -5'
18986 3' -52.7 NC_004684.1 + 2872 0.69 0.745692
Target:  5'- cGCGCCGGAcGAccugcuGGUgcgcaACACGuuCGCCGa -3'
miRNA:   3'- -CGUGGCCUaCU------UCA-----UGUGCugGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 3577 0.71 0.626462
Target:  5'- uGCGCCacagcggGGAcgUGGAGUacgucgcgcACugGGCCGCCGa -3'
miRNA:   3'- -CGUGG-------CCU--ACUUCA---------UGugCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 4319 0.75 0.429815
Target:  5'- uGCACCGGGcgcacUGGAGUGCcuAUGAcacCCACCGc -3'
miRNA:   3'- -CGUGGCCU-----ACUUCAUG--UGCU---GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 4620 0.69 0.745692
Target:  5'- aGCGCCgGGGUGAuuugaaccccgGGUcCACGgugGCCGCCa -3'
miRNA:   3'- -CGUGG-CCUACU-----------UCAuGUGC---UGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 4671 0.7 0.735297
Target:  5'- aCACCGGGUGGcgAGUGCAgcagcgccuCGAUgGCCu -3'
miRNA:   3'- cGUGGCCUACU--UCAUGU---------GCUGgUGGc -5'
18986 3' -52.7 NC_004684.1 + 4776 0.66 0.889415
Target:  5'- aGCGCCacGGcuccGggGUGCGCGAC-GCCa -3'
miRNA:   3'- -CGUGG--CCua--CuuCAUGUGCUGgUGGc -5'
18986 3' -52.7 NC_004684.1 + 4882 0.68 0.80529
Target:  5'- cGCGCCGGucAUGgcGU-CGCGcACC-CCGg -3'
miRNA:   3'- -CGUGGCC--UACuuCAuGUGC-UGGuGGC- -5'
18986 3' -52.7 NC_004684.1 + 5000 0.68 0.824747
Target:  5'- cGUACCGGgcGAAGguggaccuguggaugGCAacggUGGCCACCa -3'
miRNA:   3'- -CGUGGCCuaCUUCa--------------UGU----GCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 5131 0.76 0.366411
Target:  5'- aGCGCCGGGUGccagACGCGuggugGCCACCGu -3'
miRNA:   3'- -CGUGGCCUACuucaUGUGC-----UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 5893 0.66 0.88503
Target:  5'- -gACCGGGUGgcGgcggcgcugaucgcGCACGACCgGCUGg -3'
miRNA:   3'- cgUGGCCUACuuCa-------------UGUGCUGG-UGGC- -5'
18986 3' -52.7 NC_004684.1 + 5964 0.66 0.889415
Target:  5'- cGCGCCGG-UGA-----GCGACCgGCCGa -3'
miRNA:   3'- -CGUGGCCuACUucaugUGCUGG-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.