miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 3' -52.7 NC_004684.1 + 41310 0.66 0.909927
Target:  5'- uGCACUuccaGAUGGGcUACggcaccGCGACCGCCGa -3'
miRNA:   3'- -CGUGGc---CUACUUcAUG------UGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 43890 0.66 0.902683
Target:  5'- cGCAUCGcugggcaGGUGGAugACACGGCCAUCu -3'
miRNA:   3'- -CGUGGC-------CUACUUcaUGUGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 15377 0.66 0.882056
Target:  5'- cGCGCUGG-UGAucGGcUACGaGGCCGCCa -3'
miRNA:   3'- -CGUGGCCuACU--UC-AUGUgCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 5964 0.66 0.889415
Target:  5'- cGCGCCGG-UGA-----GCGACCgGCCGa -3'
miRNA:   3'- -CGUGGCCuACUucaugUGCUGG-UGGC- -5'
18986 3' -52.7 NC_004684.1 + 61921 0.66 0.889415
Target:  5'- uCGCgGGGUGcGGgcCACGGcacCCGCCGg -3'
miRNA:   3'- cGUGgCCUACuUCauGUGCU---GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 66557 0.66 0.916231
Target:  5'- cCACCGGGUGgcGgcguggagACAacGCCGCCa -3'
miRNA:   3'- cGUGGCCUACuuCa-------UGUgcUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 13284 0.66 0.896516
Target:  5'- cCGCCGG-UGGcuGGUGCGCG-CCGUCGg -3'
miRNA:   3'- cGUGGCCuACU--UCAUGUGCuGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 19034 0.66 0.901331
Target:  5'- gGCACCGGcggccgggcaggucAUGAAGUGCGgcaGGCUGgCGu -3'
miRNA:   3'- -CGUGGCC--------------UACUUCAUGUg--CUGGUgGC- -5'
18986 3' -52.7 NC_004684.1 + 54637 0.66 0.889415
Target:  5'- aGgACgGGGUGuuGUGgGCGACCcCCa -3'
miRNA:   3'- -CgUGgCCUACuuCAUgUGCUGGuGGc -5'
18986 3' -52.7 NC_004684.1 + 66881 0.66 0.896516
Target:  5'- aGCGCCGG-UGgcGaccuucgGCGCGGCCuuCGg -3'
miRNA:   3'- -CGUGGCCuACuuCa------UGUGCUGGugGC- -5'
18986 3' -52.7 NC_004684.1 + 21440 0.66 0.909927
Target:  5'- cGUGCUGGAcgacgacGGAGaggACAcccCGACCACCGa -3'
miRNA:   3'- -CGUGGCCUa------CUUCa--UGU---GCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 174 0.66 0.889415
Target:  5'- -gACCGGGUu-GGU-CGgGACCACCa -3'
miRNA:   3'- cgUGGCCUAcuUCAuGUgCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 46400 0.66 0.903355
Target:  5'- -gGCCgGGAUGGucgGGUcCACGGCCAgCa -3'
miRNA:   3'- cgUGG-CCUACU---UCAuGUGCUGGUgGc -5'
18986 3' -52.7 NC_004684.1 + 6749 0.66 0.901331
Target:  5'- gGC-CCGGAgccgucGGGUGCACGAagugcucgacggcaUCGCCGg -3'
miRNA:   3'- -CGuGGCCUac----UUCAUGUGCU--------------GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 15792 0.66 0.909927
Target:  5'- aCACCGGcaac-GUGCAC-ACCACCa -3'
miRNA:   3'- cGUGGCCuacuuCAUGUGcUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 5893 0.66 0.88503
Target:  5'- -gACCGGGUGgcGgcggcgcugaucgcGCACGACCgGCUGg -3'
miRNA:   3'- cgUGGCCUACuuCa-------------UGUGCUGG-UGGC- -5'
18986 3' -52.7 NC_004684.1 + 4776 0.66 0.889415
Target:  5'- aGCGCCacGGcuccGggGUGCGCGAC-GCCa -3'
miRNA:   3'- -CGUGG--CCua--CuuCAUGUGCUGgUGGc -5'
18986 3' -52.7 NC_004684.1 + 23650 0.66 0.903355
Target:  5'- gGCACCGcugcUGAccgGGUACAcCGACgGCCu -3'
miRNA:   3'- -CGUGGCcu--ACU---UCAUGU-GCUGgUGGc -5'
18986 3' -52.7 NC_004684.1 + 37100 0.66 0.882056
Target:  5'- uGCugCGGAgaacguUGAGGaggGCugGcguGCCGCCa -3'
miRNA:   3'- -CGugGCCU------ACUUCa--UGugC---UGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 9804 0.66 0.896516
Target:  5'- uGCGCCGG-UGGcacccgACGCucaaGGCCACCGu -3'
miRNA:   3'- -CGUGGCCuACUuca---UGUG----CUGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.