miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 3' -52.7 NC_004684.1 + 7695 1.12 0.001716
Target:  5'- gGCACCGGAUGAAGUACACGACCACCGg -3'
miRNA:   3'- -CGUGGCCUACUUCAUGUGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 57516 0.8 0.238922
Target:  5'- uGCGCCGGAUcccGAggcGGUggcccgccuccagaGCGCGACCGCCGa -3'
miRNA:   3'- -CGUGGCCUA---CU---UCA--------------UGUGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 65436 0.79 0.260018
Target:  5'- uGCGCUGGcGUGcGGcGCGCGGCCACCGu -3'
miRNA:   3'- -CGUGGCC-UACuUCaUGUGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 28607 0.79 0.266703
Target:  5'- cGCACUcGGUGGAGUACAUGACCGgCa -3'
miRNA:   3'- -CGUGGcCUACUUCAUGUGCUGGUgGc -5'
18986 3' -52.7 NC_004684.1 + 8323 0.79 0.273528
Target:  5'- aCGCCGGAaGAGGUGCGCG-CCAgCGa -3'
miRNA:   3'- cGUGGCCUaCUUCAUGUGCuGGUgGC- -5'
18986 3' -52.7 NC_004684.1 + 15063 0.77 0.315105
Target:  5'- aCGCCGGAUGAGGUcgacggccuuaucgGCGCGgugGCCGCCc -3'
miRNA:   3'- cGUGGCCUACUUCA--------------UGUGC---UGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 5131 0.76 0.366411
Target:  5'- aGCGCCGGGUGccagACGCGuggugGCCACCGu -3'
miRNA:   3'- -CGUGGCCUACuucaUGUGC-----UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 65473 0.76 0.392786
Target:  5'- aGCGCCuGGGUGggGgucCGCGAUgACCGu -3'
miRNA:   3'- -CGUGG-CCUACuuCau-GUGCUGgUGGC- -5'
18986 3' -52.7 NC_004684.1 + 1385 0.76 0.401848
Target:  5'- aGCuCCGGGUGggGcg-GCGGCUACCGg -3'
miRNA:   3'- -CGuGGCCUACuuCaugUGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 1486 0.75 0.429815
Target:  5'- cGCGCCGGAgguGGcccgccuguUGCGCGACCACUa -3'
miRNA:   3'- -CGUGGCCUacuUC---------AUGUGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 4319 0.75 0.429815
Target:  5'- uGCACCGGGcgcacUGGAGUGCcuAUGAcacCCACCGc -3'
miRNA:   3'- -CGUGGCCU-----ACUUCAUG--UGCU---GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 58388 0.74 0.458893
Target:  5'- gGCACCGcGcGUGGAGgccuugGCcCGGCCGCCGg -3'
miRNA:   3'- -CGUGGC-C-UACUUCa-----UGuGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 40432 0.74 0.468817
Target:  5'- cGCACCGGccuUGGucagcGGUGCccagGCGGCCGCCu -3'
miRNA:   3'- -CGUGGCCu--ACU-----UCAUG----UGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 27139 0.74 0.488987
Target:  5'- gGCGCUGGAgaUGAGGcuggACACaauGCCACCGg -3'
miRNA:   3'- -CGUGGCCU--ACUUCa---UGUGc--UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 60171 0.74 0.499223
Target:  5'- gGC-CCGG-UGAAGgcccGCACgGGCCGCCGg -3'
miRNA:   3'- -CGuGGCCuACUUCa---UGUG-CUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 48054 0.73 0.519973
Target:  5'- cGCAUgCGGAUGGcGGUuu-CGACCACCGg -3'
miRNA:   3'- -CGUG-GCCUACU-UCAuguGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 21491 0.73 0.519973
Target:  5'- cGCGCCGGucaagcAUGAGGacaagGCAcCGGCCAUCGa -3'
miRNA:   3'- -CGUGGCC------UACUUCa----UGU-GCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 57710 0.73 0.52102
Target:  5'- uCACCGGGUGGcuggccguaccgcucGUGCACGgucACCACCGu -3'
miRNA:   3'- cGUGGCCUACUu--------------CAUGUGC---UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 61957 0.73 0.528368
Target:  5'- uGCACCGGAUGuaaccgucgguGUACACcaugaGCCACCc -3'
miRNA:   3'- -CGUGGCCUACuu---------CAUGUGc----UGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 41728 0.73 0.530475
Target:  5'- cGCACCGGAggcGAucuccuccuGGUAUuucaGGCCGCCGg -3'
miRNA:   3'- -CGUGGCCUa--CU---------UCAUGug--CUGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.