miRNA display CGI


Results 1 - 20 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 3' -52.7 NC_004684.1 + 54522 0.71 0.638478
Target:  5'- uCACCGGcgGggGU--ACGAgCGCCGu -3'
miRNA:   3'- cGUGGCCuaCuuCAugUGCUgGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 25208 0.73 0.545304
Target:  5'- gGCACCGGGUGGcuucaccggcacgcuGG-ACGCGAacaaCACCGc -3'
miRNA:   3'- -CGUGGCCUACU---------------UCaUGUGCUg---GUGGC- -5'
18986 3' -52.7 NC_004684.1 + 26581 0.72 0.583991
Target:  5'- gGCGCgCGGcgGu-GUGCGCGgguucGCCACCGg -3'
miRNA:   3'- -CGUG-GCCuaCuuCAUGUGC-----UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 8598 0.72 0.591584
Target:  5'- cGCGCCGG-UGGccucgaacaagcccGGUGCACcggcACCGCCGa -3'
miRNA:   3'- -CGUGGCCuACU--------------UCAUGUGc---UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 47328 0.72 0.594844
Target:  5'- uCGCCGGuGUGGGcGUcgaGCAUGGCCACCa -3'
miRNA:   3'- cGUGGCC-UACUU-CA---UGUGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 65775 0.72 0.616634
Target:  5'- cGCGCCGG-UGGGcgcGcGCACGGCgACCGa -3'
miRNA:   3'- -CGUGGCCuACUU---CaUGUGCUGgUGGC- -5'
18986 3' -52.7 NC_004684.1 + 3577 0.71 0.626462
Target:  5'- uGCGCCacagcggGGAcgUGGAGUacgucgcgcACugGGCCGCCGa -3'
miRNA:   3'- -CGUGG-------CCU--ACUUCA---------UGugCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 2714 0.71 0.638478
Target:  5'- gGUGCCGGggGcAAGUgcgccacaccGCACGGCCACaCGu -3'
miRNA:   3'- -CGUGGCCuaC-UUCA----------UGUGCUGGUG-GC- -5'
18986 3' -52.7 NC_004684.1 + 44628 0.71 0.638478
Target:  5'- aGCGCCGGggGGagcgGGUACuCGGcCCACUGc -3'
miRNA:   3'- -CGUGGCCuaCU----UCAUGuGCU-GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 61957 0.73 0.528368
Target:  5'- uGCACCGGAUGuaaccgucgguGUACACcaugaGCCACCc -3'
miRNA:   3'- -CGUGGCCUACuu---------CAUGUGc----UGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 48054 0.73 0.519973
Target:  5'- cGCAUgCGGAUGGcGGUuu-CGACCACCGg -3'
miRNA:   3'- -CGUG-GCCUACU-UCAuguGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 21491 0.73 0.519973
Target:  5'- cGCGCCGGucaagcAUGAGGacaagGCAcCGGCCAUCGa -3'
miRNA:   3'- -CGUGGCC------UACUUCa----UGU-GCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 65436 0.79 0.260018
Target:  5'- uGCGCUGGcGUGcGGcGCGCGGCCACCGu -3'
miRNA:   3'- -CGUGGCC-UACuUCaUGUGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 8323 0.79 0.273528
Target:  5'- aCGCCGGAaGAGGUGCGCG-CCAgCGa -3'
miRNA:   3'- cGUGGCCUaCUUCAUGUGCuGGUgGC- -5'
18986 3' -52.7 NC_004684.1 + 15063 0.77 0.315105
Target:  5'- aCGCCGGAUGAGGUcgacggccuuaucgGCGCGgugGCCGCCc -3'
miRNA:   3'- cGUGGCCUACUUCA--------------UGUGC---UGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 1385 0.76 0.401848
Target:  5'- aGCuCCGGGUGggGcg-GCGGCUACCGg -3'
miRNA:   3'- -CGuGGCCUACuuCaugUGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 4319 0.75 0.429815
Target:  5'- uGCACCGGGcgcacUGGAGUGCcuAUGAcacCCACCGc -3'
miRNA:   3'- -CGUGGCCU-----ACUUCAUG--UGCU---GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 1486 0.75 0.429815
Target:  5'- cGCGCCGGAgguGGcccgccuguUGCGCGACCACUa -3'
miRNA:   3'- -CGUGGCCUacuUC---------AUGUGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 58388 0.74 0.458893
Target:  5'- gGCACCGcGcGUGGAGgccuugGCcCGGCCGCCGg -3'
miRNA:   3'- -CGUGGC-C-UACUUCa-----UGuGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 40432 0.74 0.468817
Target:  5'- cGCACCGGccuUGGucagcGGUGCccagGCGGCCGCCu -3'
miRNA:   3'- -CGUGGCCu--ACU-----UCAUG----UGCUGGUGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.