miRNA display CGI


Results 1 - 20 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 3' -52.7 NC_004684.1 + 7695 1.12 0.001716
Target:  5'- gGCACCGGAUGAAGUACACGACCACCGg -3'
miRNA:   3'- -CGUGGCCUACUUCAUGUGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 19672 0.72 0.594844
Target:  5'- cCGCCGGAcUGGgcaGGUGCACGAC-GCCa -3'
miRNA:   3'- cGUGGCCU-ACU---UCAUGUGCUGgUGGc -5'
18986 3' -52.7 NC_004684.1 + 60229 0.71 0.626462
Target:  5'- uGCACCaGGAgcaAGGUGCGCGACCcggucacACCu -3'
miRNA:   3'- -CGUGG-CCUac-UUCAUGUGCUGG-------UGGc -5'
18986 3' -52.7 NC_004684.1 + 66557 0.66 0.916231
Target:  5'- cCACCGGGUGgcGgcguggagACAacGCCGCCa -3'
miRNA:   3'- cGUGGCCUACuuCa-------UGUgcUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 27139 0.74 0.488987
Target:  5'- gGCGCUGGAgaUGAGGcuggACACaauGCCACCGg -3'
miRNA:   3'- -CGUGGCCU--ACUUCa---UGUGc--UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 60171 0.74 0.499223
Target:  5'- gGC-CCGG-UGAAGgcccGCACgGGCCGCCGg -3'
miRNA:   3'- -CGuGGCCuACUUCa---UGUG-CUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 41728 0.73 0.530475
Target:  5'- cGCACCGGAggcGAucuccuccuGGUAUuucaGGCCGCCGg -3'
miRNA:   3'- -CGUGGCCUa--CU---------UCAUGug--CUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 21421 0.73 0.530475
Target:  5'- cGCACaCGGAUGcggcGGUcGCGCcgGACCACCGc -3'
miRNA:   3'- -CGUG-GCCUACu---UCA-UGUG--CUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 65404 0.73 0.551701
Target:  5'- gGCGCUGGccGuGGUGCACagcgaGGCCGCCGu -3'
miRNA:   3'- -CGUGGCCuaCuUCAUGUG-----CUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 61536 0.72 0.583991
Target:  5'- aGCACCGGcgGcGAG-ACAauGCCGCCGg -3'
miRNA:   3'- -CGUGGCCuaC-UUCaUGUgcUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 37084 0.73 0.562411
Target:  5'- cGCGCCGGAUGuacaccuuuAGGUGCGCGucgGCgaaACCGa -3'
miRNA:   3'- -CGUGGCCUAC---------UUCAUGUGC---UGg--UGGC- -5'
18986 3' -52.7 NC_004684.1 + 64664 0.73 0.551701
Target:  5'- cGUACCGGGcc-GGUACACGAuCCugCGc -3'
miRNA:   3'- -CGUGGCCUacuUCAUGUGCU-GGugGC- -5'
18986 3' -52.7 NC_004684.1 + 28607 0.79 0.266703
Target:  5'- cGCACUcGGUGGAGUACAUGACCGgCa -3'
miRNA:   3'- -CGUGGcCUACUUCAUGUGCUGGUgGc -5'
18986 3' -52.7 NC_004684.1 + 51922 0.72 0.573177
Target:  5'- cGCACUGGGUGAugcuccagcgcAGcgcGCGCGGCCugGCCGu -3'
miRNA:   3'- -CGUGGCCUACU-----------UCa--UGUGCUGG--UGGC- -5'
18986 3' -52.7 NC_004684.1 + 5131 0.76 0.366411
Target:  5'- aGCGCCGGGUGccagACGCGuggugGCCACCGu -3'
miRNA:   3'- -CGUGGCCUACuucaUGUGC-----UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 52761 0.73 0.541053
Target:  5'- -aACCGGGUcaaaGAGGUGCugG-CCACCu -3'
miRNA:   3'- cgUGGCCUA----CUUCAUGugCuGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 20737 0.72 0.573177
Target:  5'- uGCGCCGGAccucUGggGUcaGCuCGACgCGCUGg -3'
miRNA:   3'- -CGUGGCCU----ACuuCA--UGuGCUG-GUGGC- -5'
18986 3' -52.7 NC_004684.1 + 39183 0.72 0.605728
Target:  5'- uCACCGGGUGc-GUAgGC-ACCACCGg -3'
miRNA:   3'- cGUGGCCUACuuCAUgUGcUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 65473 0.76 0.392786
Target:  5'- aGCGCCuGGGUGggGgucCGCGAUgACCGu -3'
miRNA:   3'- -CGUGG-CCUACuuCau-GUGCUGgUGGC- -5'
18986 3' -52.7 NC_004684.1 + 57710 0.73 0.52102
Target:  5'- uCACCGGGUGGcuggccguaccgcucGUGCACGgucACCACCGu -3'
miRNA:   3'- cGUGGCCUACUu--------------CAUGUGC---UGGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.