miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 3' -52.7 NC_004684.1 + 67023 0.69 0.776151
Target:  5'- cGCGCCGGAggccuucgccGAGGUug-UGGCCGCCa -3'
miRNA:   3'- -CGUGGCCUa---------CUUCAuguGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 66881 0.66 0.896516
Target:  5'- aGCGCCGG-UGgcGaccuucgGCGCGGCCuuCGg -3'
miRNA:   3'- -CGUGGCCuACuuCa------UGUGCUGGugGC- -5'
18986 3' -52.7 NC_004684.1 + 66826 0.7 0.682016
Target:  5'- uGUACCGGGU--GGUGCGCaaGACCgucACCGa -3'
miRNA:   3'- -CGUGGCCUAcuUCAUGUG--CUGG---UGGC- -5'
18986 3' -52.7 NC_004684.1 + 66772 0.67 0.874444
Target:  5'- cCGCCGGGUGGgaAGacCugGgcACCGCCGg -3'
miRNA:   3'- cGUGGCCUACU--UCauGugC--UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 66609 0.66 0.896516
Target:  5'- cCGCCGGGccgcgcUGAAGgcggccCGCGagGCCGCCGc -3'
miRNA:   3'- cGUGGCCU------ACUUCau----GUGC--UGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 66557 0.66 0.916231
Target:  5'- cCACCGGGUGgcGgcguggagACAacGCCGCCa -3'
miRNA:   3'- cGUGGCCUACuuCa-------UGUgcUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 65874 0.69 0.766129
Target:  5'- gGCAUCGGucgccGUGCGCGcgcCCACCGg -3'
miRNA:   3'- -CGUGGCCuacuuCAUGUGCu--GGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 65832 0.67 0.866585
Target:  5'- gGCACCGGcgGcuc-ACAgGugCACCGc -3'
miRNA:   3'- -CGUGGCCuaCuucaUGUgCugGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 65775 0.72 0.616634
Target:  5'- cGCGCCGG-UGGGcgcGcGCACGGCgACCGa -3'
miRNA:   3'- -CGUGGCCuACUU---CaUGUGCUGgUGGC- -5'
18986 3' -52.7 NC_004684.1 + 65473 0.76 0.392786
Target:  5'- aGCGCCuGGGUGggGgucCGCGAUgACCGu -3'
miRNA:   3'- -CGUGG-CCUACuuCau-GUGCUGgUGGC- -5'
18986 3' -52.7 NC_004684.1 + 65436 0.79 0.260018
Target:  5'- uGCGCUGGcGUGcGGcGCGCGGCCACCGu -3'
miRNA:   3'- -CGUGGCC-UACuUCaUGUGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 65404 0.73 0.551701
Target:  5'- gGCGCUGGccGuGGUGCACagcgaGGCCGCCGu -3'
miRNA:   3'- -CGUGGCCuaCuUCAUGUG-----CUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 64801 0.67 0.874444
Target:  5'- -gACCcGAUGGAGgcCcugGCGGCCGCCa -3'
miRNA:   3'- cgUGGcCUACUUCauG---UGCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 64664 0.73 0.551701
Target:  5'- cGUACCGGGcc-GGUACACGAuCCugCGc -3'
miRNA:   3'- -CGUGGCCUacuUCAUGUGCU-GGugGC- -5'
18986 3' -52.7 NC_004684.1 + 64249 0.7 0.682016
Target:  5'- gGCGCUGGGUGuuGGcGCAC-ACCACCc -3'
miRNA:   3'- -CGUGGCCUACu-UCaUGUGcUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 63935 0.66 0.889415
Target:  5'- cGCGCCgaacuGGGUGccGUaccACAUGGCCACgGu -3'
miRNA:   3'- -CGUGG-----CCUACuuCA---UGUGCUGGUGgC- -5'
18986 3' -52.7 NC_004684.1 + 63178 0.68 0.814659
Target:  5'- cGCGCCGGGUcGAcucgACGCGGCCgaacgGCCc -3'
miRNA:   3'- -CGUGGCCUA-CUuca-UGUGCUGG-----UGGc -5'
18986 3' -52.7 NC_004684.1 + 63069 0.67 0.841596
Target:  5'- cCACCGGccac-GUGCGC-ACCACCGa -3'
miRNA:   3'- cGUGGCCuacuuCAUGUGcUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 63028 0.67 0.850154
Target:  5'- cGCGCCGGAaGuuauGG-ACAUgggGACCGCCu -3'
miRNA:   3'- -CGUGGCCUaCu---UCaUGUG---CUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 62463 0.7 0.682016
Target:  5'- cGCuCCGGGaggUGGccGUugGCGACCGCCu -3'
miRNA:   3'- -CGuGGCCU---ACUu-CAugUGCUGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.