Results 21 - 40 of 361 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18986 | 5' | -63.5 | NC_004684.1 | + | 1718 | 0.66 | 0.369104 |
Target: 5'- gGCACCGGCCaGUGCC-GCGaccucaCCACCa- -3' miRNA: 3'- gCGUGGUCGG-CGUGGuCGC------GGUGGgc -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 65774 | 0.66 | 0.345227 |
Target: 5'- gCGCGCCGGUgggcgCGCGCaCGGCGaCCGaugCCGu -3' miRNA: 3'- -GCGUGGUCG-----GCGUG-GUCGC-GGUg--GGC- -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 18266 | 0.66 | 0.353061 |
Target: 5'- gGCAaCGGCaCGC-CCGGcCGCCugCUGg -3' miRNA: 3'- gCGUgGUCG-GCGuGGUC-GCGGugGGC- -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 12208 | 0.66 | 0.345227 |
Target: 5'- aGUuCCAGCauCACCGgguuccgguacGUGCCGCCCGa -3' miRNA: 3'- gCGuGGUCGgcGUGGU-----------CGCGGUGGGC- -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 5712 | 0.66 | 0.337518 |
Target: 5'- gCGCGCCcucgcGCCGCagauGCCGuuCGCCAUCCa -3' miRNA: 3'- -GCGUGGu----CGGCG----UGGUc-GCGGUGGGc -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 13969 | 0.66 | 0.36102 |
Target: 5'- uGaCGgCAGUCGCgcggcgcagGCCAGCccgGCCACCUGg -3' miRNA: 3'- gC-GUgGUCGGCG---------UGGUCG---CGGUGGGC- -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 27732 | 0.66 | 0.345227 |
Target: 5'- gGCACCuuugaacUCGCGCCgucgaugacgcaGGUGUCGCCCGg -3' miRNA: 3'- gCGUGGuc-----GGCGUGG------------UCGCGGUGGGC- -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 47755 | 0.66 | 0.345227 |
Target: 5'- gCGCGuuGGCCGgAC--GCGCC-CCCGg -3' miRNA: 3'- -GCGUggUCGGCgUGguCGCGGuGGGC- -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 63221 | 0.66 | 0.345227 |
Target: 5'- gGcCACCGGCgGCucguuGCCgGGCGUCGgCCCGa -3' miRNA: 3'- gC-GUGGUCGgCG-----UGG-UCGCGGU-GGGC- -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 13529 | 0.66 | 0.360219 |
Target: 5'- uGCGCCgacgaguucgaggAGCUGCGCCuGGCGgCCAUCgGc -3' miRNA: 3'- gCGUGG-------------UCGGCGUGG-UCGC-GGUGGgC- -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 26123 | 0.66 | 0.36102 |
Target: 5'- gCGCuguCCGaCCGCACCAGCaccucgcugGCCGCgCa -3' miRNA: 3'- -GCGu--GGUcGGCGUGGUCG---------CGGUGgGc -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 24504 | 0.66 | 0.345227 |
Target: 5'- gGUGCCgcagGGCCGCGCguucggCGGUGCCAUCUa -3' miRNA: 3'- gCGUGG----UCGGCGUG------GUCGCGGUGGGc -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 56736 | 0.66 | 0.369104 |
Target: 5'- cCGCGCCAGCaCGggaACCGGCaCCagACCaCGg -3' miRNA: 3'- -GCGUGGUCG-GCg--UGGUCGcGG--UGG-GC- -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 4447 | 0.66 | 0.36102 |
Target: 5'- gGCGCagcuggaGGCCGCACguGCGCgCGaggCCGu -3' miRNA: 3'- gCGUGg------UCGGCGUGguCGCG-GUg--GGC- -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 15616 | 0.66 | 0.37731 |
Target: 5'- gCGgAUCAG-CGCcuCCAGCGCCcggcCCCGg -3' miRNA: 3'- -GCgUGGUCgGCGu-GGUCGCGGu---GGGC- -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 12904 | 0.66 | 0.337518 |
Target: 5'- uCGcCGCCAGCgGUGCCGGUG-CGCCg- -3' miRNA: 3'- -GC-GUGGUCGgCGUGGUCGCgGUGGgc -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 49613 | 0.66 | 0.369104 |
Target: 5'- uCGUugCGGCUG-GCCGGUGUCcaGCCCa -3' miRNA: 3'- -GCGugGUCGGCgUGGUCGCGG--UGGGc -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 52314 | 0.66 | 0.369104 |
Target: 5'- uCGCGCgCAGCUGCGCgGuGCGCagGCCa- -3' miRNA: 3'- -GCGUG-GUCGGCGUGgU-CGCGg-UGGgc -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 4739 | 0.66 | 0.345227 |
Target: 5'- gCGCACggccaCAGCCGCaaguGCCgcgaccugaucaAGCGCCACggcuCCGg -3' miRNA: 3'- -GCGUG-----GUCGGCG----UGG------------UCGCGGUG----GGC- -5' |
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18986 | 5' | -63.5 | NC_004684.1 | + | 21286 | 0.66 | 0.345227 |
Target: 5'- gCGCGcCCGGCCGUAUCuGCGCaACgCa -3' miRNA: 3'- -GCGU-GGUCGGCGUGGuCGCGgUGgGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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