miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 5' -63.5 NC_004684.1 + 2691 0.65 0.3848
Target:  5'- gGCACCgcauccccggccuGGCCgGUGCCGggggcaaguGCGCCACaCCGc -3'
miRNA:   3'- gCGUGG-------------UCGG-CGUGGU---------CGCGGUG-GGC- -5'
18986 5' -63.5 NC_004684.1 + 47755 0.66 0.345227
Target:  5'- gCGCGuuGGCCGgAC--GCGCC-CCCGg -3'
miRNA:   3'- -GCGUggUCGGCgUGguCGCGGuGGGC- -5'
18986 5' -63.5 NC_004684.1 + 15616 0.66 0.37731
Target:  5'- gCGgAUCAG-CGCcuCCAGCGCCcggcCCCGg -3'
miRNA:   3'- -GCgUGGUCgGCGu-GGUCGCGGu---GGGC- -5'
18986 5' -63.5 NC_004684.1 + 20235 0.66 0.336754
Target:  5'- uGCGCCuGgCGCGCCGGUaCUacuuccgGCCCGg -3'
miRNA:   3'- gCGUGGuCgGCGUGGUCGcGG-------UGGGC- -5'
18986 5' -63.5 NC_004684.1 + 21286 0.66 0.345227
Target:  5'- gCGCGcCCGGCCGUAUCuGCGCaACgCa -3'
miRNA:   3'- -GCGU-GGUCGGCGUGGuCGCGgUGgGc -5'
18986 5' -63.5 NC_004684.1 + 50019 0.66 0.345227
Target:  5'- gCGCACCGuCgGCGgCAGCGUgGCCgGu -3'
miRNA:   3'- -GCGUGGUcGgCGUgGUCGCGgUGGgC- -5'
18986 5' -63.5 NC_004684.1 + 10504 0.66 0.337518
Target:  5'- aCGCACUgGGCCGCcgacggUCAGCGCgCACCg- -3'
miRNA:   3'- -GCGUGG-UCGGCGu-----GGUCGCG-GUGGgc -5'
18986 5' -63.5 NC_004684.1 + 27732 0.66 0.345227
Target:  5'- gGCACCuuugaacUCGCGCCgucgaugacgcaGGUGUCGCCCGg -3'
miRNA:   3'- gCGUGGuc-----GGCGUGG------------UCGCGGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 63221 0.66 0.345227
Target:  5'- gGcCACCGGCgGCucguuGCCgGGCGUCGgCCCGa -3'
miRNA:   3'- gC-GUGGUCGgCG-----UGG-UCGCGGU-GGGC- -5'
18986 5' -63.5 NC_004684.1 + 35767 0.66 0.345227
Target:  5'- uGCAgacCCAGCgCGCGCCgcgcuccaucguGGCGCagucCCCGg -3'
miRNA:   3'- gCGU---GGUCG-GCGUGG------------UCGCGgu--GGGC- -5'
18986 5' -63.5 NC_004684.1 + 58446 0.66 0.345227
Target:  5'- cCGUGCCGGacccgacugcCCGCugagGCCAGCGCgaacuugccgCGCCCGc -3'
miRNA:   3'- -GCGUGGUC----------GGCG----UGGUCGCG----------GUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 12904 0.66 0.337518
Target:  5'- uCGcCGCCAGCgGUGCCGGUG-CGCCg- -3'
miRNA:   3'- -GC-GUGGUCGgCGUGGUCGCgGUGGgc -5'
18986 5' -63.5 NC_004684.1 + 65774 0.66 0.345227
Target:  5'- gCGCGCCGGUgggcgCGCGCaCGGCGaCCGaugCCGu -3'
miRNA:   3'- -GCGUGGUCG-----GCGUG-GUCGC-GGUg--GGC- -5'
18986 5' -63.5 NC_004684.1 + 12208 0.66 0.345227
Target:  5'- aGUuCCAGCauCACCGgguuccgguacGUGCCGCCCGa -3'
miRNA:   3'- gCGuGGUCGgcGUGGU-----------CGCGGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 28073 0.66 0.337518
Target:  5'- gGCGgUguGGCCGgGCCGccGCGCgACCCGc -3'
miRNA:   3'- gCGUgG--UCGGCgUGGU--CGCGgUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 5949 0.66 0.337518
Target:  5'- gCGguCCaaccuGGCCGCGCCggugAGCGaCCGgCCGa -3'
miRNA:   3'- -GCguGG-----UCGGCGUGG----UCGC-GGUgGGC- -5'
18986 5' -63.5 NC_004684.1 + 4739 0.66 0.345227
Target:  5'- gCGCACggccaCAGCCGCaaguGCCgcgaccugaucaAGCGCCACggcuCCGg -3'
miRNA:   3'- -GCGUG-----GUCGGCG----UGG------------UCGCGGUG----GGC- -5'
18986 5' -63.5 NC_004684.1 + 5712 0.66 0.337518
Target:  5'- gCGCGCCcucgcGCCGCagauGCCGuuCGCCAUCCa -3'
miRNA:   3'- -GCGUGGu----CGGCG----UGGUc-GCGGUGGGc -5'
18986 5' -63.5 NC_004684.1 + 18266 0.66 0.353061
Target:  5'- gGCAaCGGCaCGC-CCGGcCGCCugCUGg -3'
miRNA:   3'- gCGUgGUCG-GCGuGGUC-GCGGugGGC- -5'
18986 5' -63.5 NC_004684.1 + 24504 0.66 0.345227
Target:  5'- gGUGCCgcagGGCCGCGCguucggCGGUGCCAUCUa -3'
miRNA:   3'- gCGUGG----UCGGCGUG------GUCGCGGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.