miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 5' -63.5 NC_004684.1 + 796 0.69 0.231225
Target:  5'- aGCGCCAgGCCGUccACCGGCgGCUgACCuCGg -3'
miRNA:   3'- gCGUGGU-CGGCG--UGGUCG-CGG-UGG-GC- -5'
18986 5' -63.5 NC_004684.1 + 1149 0.74 0.093888
Target:  5'- gCGcCGCCAGCCaGCacaACCGGUGCCGCCa- -3'
miRNA:   3'- -GC-GUGGUCGG-CG---UGGUCGCGGUGGgc -5'
18986 5' -63.5 NC_004684.1 + 1195 0.75 0.086654
Target:  5'- uCGUGCCAGuuGCGCCGGguCGCgGCCUGg -3'
miRNA:   3'- -GCGUGGUCggCGUGGUC--GCGgUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 1282 0.72 0.14681
Target:  5'- cCGCGCUuGCCGUAguaguCCAGCGCCugCgGc -3'
miRNA:   3'- -GCGUGGuCGGCGU-----GGUCGCGGugGgC- -5'
18986 5' -63.5 NC_004684.1 + 1410 0.68 0.254838
Target:  5'- gGUACgGGCgGCugaGCCuGCGCgACCCGc -3'
miRNA:   3'- gCGUGgUCGgCG---UGGuCGCGgUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 1499 0.71 0.154585
Target:  5'- gCGCAggcUCAGCCGCccguACCGGUagccGCCGCCCc -3'
miRNA:   3'- -GCGU---GGUCGGCG----UGGUCG----CGGUGGGc -5'
18986 5' -63.5 NC_004684.1 + 1629 0.7 0.20433
Target:  5'- uGCACCGGCgcaaccggGUACCGGCGCCcaaguggggccaGCUCGa -3'
miRNA:   3'- gCGUGGUCGg-------CGUGGUCGCGG------------UGGGC- -5'
18986 5' -63.5 NC_004684.1 + 1718 0.66 0.369104
Target:  5'- gGCACCGGCCaGUGCC-GCGaccucaCCACCa- -3'
miRNA:   3'- gCGUGGUCGG-CGUGGuCGC------GGUGGgc -5'
18986 5' -63.5 NC_004684.1 + 1722 0.67 0.314423
Target:  5'- gGCGCCGGUacccgguUGCGCCGGUGCagguGCCgGa -3'
miRNA:   3'- gCGUGGUCG-------GCGUGGUCGCGg---UGGgC- -5'
18986 5' -63.5 NC_004684.1 + 2201 0.72 0.146431
Target:  5'- aGCuccgACCAcGCCGCGCCGuagugcuGCGCCACCa- -3'
miRNA:   3'- gCG----UGGU-CGGCGUGGU-------CGCGGUGGgc -5'
18986 5' -63.5 NC_004684.1 + 2691 0.65 0.3848
Target:  5'- gGCACCgcauccccggccuGGCCgGUGCCGggggcaaguGCGCCACaCCGc -3'
miRNA:   3'- gCGUGG-------------UCGG-CGUGGU---------CGCGGUG-GGC- -5'
18986 5' -63.5 NC_004684.1 + 2799 0.68 0.261043
Target:  5'- gCGCACUuGCCcccgGCACCGGCcagGCCggggaugcgguGCCCGg -3'
miRNA:   3'- -GCGUGGuCGG----CGUGGUCG---CGG-----------UGGGC- -5'
18986 5' -63.5 NC_004684.1 + 2962 0.7 0.194354
Target:  5'- gCGCACCAGCagGUcguCCGGCGCgACCa- -3'
miRNA:   3'- -GCGUGGUCGg-CGu--GGUCGCGgUGGgc -5'
18986 5' -63.5 NC_004684.1 + 3422 0.69 0.225617
Target:  5'- gGCACCgcuGGCCGCcacagUCAGCGgCACCaCGg -3'
miRNA:   3'- gCGUGG---UCGGCGu----GGUCGCgGUGG-GC- -5'
18986 5' -63.5 NC_004684.1 + 3451 0.7 0.184806
Target:  5'- uGCGCCAGgCGUGCUggAGCaCCGCCUGg -3'
miRNA:   3'- gCGUGGUCgGCGUGG--UCGcGGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 3484 0.69 0.236949
Target:  5'- aCGC-CgGGCCGCACCGugGCCGCCa- -3'
miRNA:   3'- -GCGuGgUCGGCGUGGUcgCGGUGGgc -5'
18986 5' -63.5 NC_004684.1 + 3606 0.72 0.132321
Target:  5'- gCGCACUgGGCCGCcgaacacgagugGCCGaagcGCGCCACCUGg -3'
miRNA:   3'- -GCGUGG-UCGGCG------------UGGU----CGCGGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 3672 0.69 0.242793
Target:  5'- gCGCACacccuguuGGCaCGCuggcaggagaucGCCAGCGCCGCCgCGc -3'
miRNA:   3'- -GCGUGg-------UCG-GCG------------UGGUCGCGGUGG-GC- -5'
18986 5' -63.5 NC_004684.1 + 4244 0.68 0.254838
Target:  5'- gCGCGCaggAGCCGCACuCGGCcaCCACCa- -3'
miRNA:   3'- -GCGUGg--UCGGCGUG-GUCGc-GGUGGgc -5'
18986 5' -63.5 NC_004684.1 + 4319 0.73 0.128911
Target:  5'- uGCACCGGgCGCACUggAGUGCCuaugacACCCa -3'
miRNA:   3'- gCGUGGUCgGCGUGG--UCGCGG------UGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.