miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 5' -63.5 NC_004684.1 + 7661 1.08 0.000231
Target:  5'- gCGCACCAGCCGCACCAGCGCCACCCGg -3'
miRNA:   3'- -GCGUGGUCGGCGUGGUCGCGGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 57221 0.82 0.024659
Target:  5'- gGCgaACCAGCCGCGCCAGUGCUGCCa- -3'
miRNA:   3'- gCG--UGGUCGGCGUGGUCGCGGUGGgc -5'
18986 5' -63.5 NC_004684.1 + 34167 0.82 0.027544
Target:  5'- uCGCGCCcGCCGCGCCAGgGUCGCCgGu -3'
miRNA:   3'- -GCGUGGuCGGCGUGGUCgCGGUGGgC- -5'
18986 5' -63.5 NC_004684.1 + 43559 0.8 0.037303
Target:  5'- cCGCACCugcugccGCCGCACCuGCuGCCGCCCc -3'
miRNA:   3'- -GCGUGGu------CGGCGUGGuCG-CGGUGGGc -5'
18986 5' -63.5 NC_004684.1 + 16451 0.78 0.053258
Target:  5'- uGUACuCGGCCGCcagcuugucgGCCAGCGCCAgCCGc -3'
miRNA:   3'- gCGUG-GUCGGCG----------UGGUCGCGGUgGGC- -5'
18986 5' -63.5 NC_004684.1 + 11951 0.78 0.05473
Target:  5'- gGuCGCCAGCCugGCACCugcGGCGCCACCgCGa -3'
miRNA:   3'- gC-GUGGUCGG--CGUGG---UCGCGGUGG-GC- -5'
18986 5' -63.5 NC_004684.1 + 6004 0.78 0.055329
Target:  5'- gCGCgGCCAGCCggucgugcgcgaucaGCGCCGcCGCCACCCGg -3'
miRNA:   3'- -GCG-UGGUCGG---------------CGUGGUcGCGGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 25109 0.77 0.061021
Target:  5'- cCGCcuCCAGCUGCACCGGCGCUgaGCgCGa -3'
miRNA:   3'- -GCGu-GGUCGGCGUGGUCGCGG--UGgGC- -5'
18986 5' -63.5 NC_004684.1 + 66985 0.77 0.061021
Target:  5'- cCGCGCCgaaGGCCGCGCCgaaGGuCGCCACCgGc -3'
miRNA:   3'- -GCGUGG---UCGGCGUGG---UC-GCGGUGGgC- -5'
18986 5' -63.5 NC_004684.1 + 13369 0.76 0.069873
Target:  5'- gCGCACCAGCC--ACCGGCGgCCACCa- -3'
miRNA:   3'- -GCGUGGUCGGcgUGGUCGC-GGUGGgc -5'
18986 5' -63.5 NC_004684.1 + 55674 0.76 0.076585
Target:  5'- gCGCACCAGCUGCuggaccuacuuuuggACCAGCGCgACagCCGu -3'
miRNA:   3'- -GCGUGGUCGGCG---------------UGGUCGCGgUG--GGC- -5'
18986 5' -63.5 NC_004684.1 + 48712 0.75 0.08213
Target:  5'- uGCGgCGGCCcUGCCAGCGCUugCCGg -3'
miRNA:   3'- gCGUgGUCGGcGUGGUCGCGGugGGC- -5'
18986 5' -63.5 NC_004684.1 + 42317 0.75 0.084363
Target:  5'- uCGCGCCGguGCCGaCACCGGCGgCCACgUCGg -3'
miRNA:   3'- -GCGUGGU--CGGC-GUGGUCGC-GGUG-GGC- -5'
18986 5' -63.5 NC_004684.1 + 34248 0.75 0.084363
Target:  5'- gCGUGCCGGUgagcaGCACC-GUGCCGCCCGa -3'
miRNA:   3'- -GCGUGGUCGg----CGUGGuCGCGGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 1195 0.75 0.086654
Target:  5'- uCGUGCCAGuuGCGCCGGguCGCgGCCUGg -3'
miRNA:   3'- -GCGUGGUCggCGUGGUC--GCGgUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 48040 0.75 0.086654
Target:  5'- -cCGCCAGCCGUGCCGaCGCCACCa- -3'
miRNA:   3'- gcGUGGUCGGCGUGGUcGCGGUGGgc -5'
18986 5' -63.5 NC_004684.1 + 54249 0.75 0.088057
Target:  5'- gGCACCGcGCCGggacagcuccucaGCCAGCGCCgccACCCGg -3'
miRNA:   3'- gCGUGGU-CGGCg------------UGGUCGCGG---UGGGC- -5'
18986 5' -63.5 NC_004684.1 + 58727 0.75 0.088767
Target:  5'- gGCACCuGGCCGCACCGggcacgcaugaucGCGUUGCCCu -3'
miRNA:   3'- gCGUGG-UCGGCGUGGU-------------CGCGGUGGGc -5'
18986 5' -63.5 NC_004684.1 + 41518 0.75 0.089004
Target:  5'- gGCACC-GCCGCACCaccgccacgggGGaCGCCACCgCGa -3'
miRNA:   3'- gCGUGGuCGGCGUGG-----------UC-GCGGUGG-GC- -5'
18986 5' -63.5 NC_004684.1 + 59557 0.75 0.091415
Target:  5'- gCGCGCCGuuGUCGCACCAGCGCaugUCCa -3'
miRNA:   3'- -GCGUGGU--CGGCGUGGUCGCGgu-GGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.